Probes in 0 iteration

Probes are now written at the 0 iteration.

Additionally, and this shouldn't be done, some small changes to the quad
elements. This should be done in a separate commit, but I'm lazy.

src/modules/init/moduleInput.f90

@@ -314,6 +314,7 @@ MODULE moduleInput
       USE moduleOutput
       USE moduleRefParam
       USE moduleRandom
+      USE moduleProbe
       USE json_module
       IMPLICIT NONE
 
@@ -420,6 +421,9 @@ MODULE moduleInput
 
               END IF
 
+              !Assign particles to probes
+              CALL doProbes(partNew)
+
             END DO
 
             DEALLOCATE(sourceScalar, sourceArray)
@@ -1089,6 +1093,8 @@ MODULE moduleInput
 
       END DO
 
+      CALL resetProbes(tInitial)
+
     END SUBROUTINE readProbes
 
     SUBROUTINE readEMBoundary(config)