First version of manual incorporated into the main repository.

Information added to account for changes in collisional processes
mostly.

doc/user-manual/bibliography.bib

@@ -0,0 +1,44 @@
+% Encoding: UTF-8
+
+@InProceedings{boris1970relativistic,
+  author    = {Boris, Jay P},
+  booktitle = {Proc. Fourth Conf. Num. Sim. Plasmas},
+  title     = {Relativistic plasma simulation-optimization of a hybrid code},
+  year      = {1970},
+  pages     = {3--67},
+}
+
+@Misc{gfortranURL,
+  author       = {GNU Project},
+  title        = {gfortran - the GNU Fortran compiler},
+  howpublished = {\url{https://gcc.gnu.org/wiki/GFortran}},
+}
+
+@Misc{ifortURL,
+  author       = {Intel\textsuperscript{\textregistered}},
+  title        = {Intel\textsuperscript{\textregistered} Fortran Compiler},
+  howpublished = {\url{https://software.intel.com/content/www/us/en/develop/tools/oneapi/components/fortran-compiler.html}},
+}
+
+@Misc{openblasURL,
+  title        = {OpenBLAS, an optimized BLAS library},
+  howpublished = {\url{https://www.openblas.net/}},
+}
+
+@Misc{jsonfortranURL,
+  title        = {JSON-Fortran},
+  howpublished = {\url{https://github.com/jacobwilliams/json-fortran}},
+}
+
+@Misc{jsonURL,
+  title        = {JSON, JavaScript Object Notation},
+  howpublished = {\url{https://www.json.org/json-en.html}},
+}
+
+@Misc{gmshURL,
+  author       = {Christophe Geuzaine and Jean-François Remacle},
+  title        = {Gmsh},
+  howpublished = {\url{https://gmsh.info/}},
+}
+
+@Comment{jabref-meta: databaseType:bibtex;}