First implementation of 1D radial case. Only charged particles taked

into account (as in 1D Cartesian case).

The 1D Cathode example case has been modified, having now 2 input files:
  - inputCart.json: Used for Cartesian coordinates
  - inputRad.json:  Used for Radial coordinates

Pusher is a Boris pusher but without z direction.
This commit is contained in:
Jorge Gonzalez 2020-12-13 22:14:37 +01:00
commit d3d070a367
15 changed files with 1024 additions and 109 deletions

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@ -1,11 +1,11 @@
all: moduleMesh1D.o moduleMesh1DBoundary.o moduleMesh1DRead.o
all: moduleMesh1DCart.o moduleMesh1DCartBoundary.o moduleMesh1DCartRead.o
moduleMesh1D.o: moduleMesh1D.f90
moduleMesh1DCart.o: moduleMesh1DCart.f90
$(FC) $(FCFLAGS) -c $(subst .o,.f90,$@) -o $(OBJDIR)/$@
moduleMesh1DBoundary.o: moduleMesh1D.o moduleMesh1DBoundary.f90
moduleMesh1DCartBoundary.o: moduleMesh1DCart.o moduleMesh1DCartBoundary.f90
$(FC) $(FCFLAGS) -c $(subst .o,.f90,$@) -o $(OBJDIR)/$@
moduleMesh1DRead.o: moduleMesh1D.o moduleMesh1DBoundary.o moduleMesh1DRead.f90
moduleMesh1DCartRead.o: moduleMesh1DCart.o moduleMesh1DCartBoundary.o moduleMesh1DCartRead.f90
$(FC) $(FCFLAGS) -c $(subst .o,.f90,$@) -o $(OBJDIR)/$@

View file

@ -2,40 +2,40 @@
! x == x
! y == unused
! z == unused
MODULE moduleMesh1D
MODULE moduleMesh1DCart
USE moduleMesh
IMPLICIT NONE
TYPE, PUBLIC, EXTENDS(meshNode):: meshNode1D
TYPE, PUBLIC, EXTENDS(meshNode):: meshNode1DCart
!Element coordinates
REAL(8):: x = 0.D0
CONTAINS
PROCEDURE, PASS:: init => initNode1D
PROCEDURE, PASS:: getCoordinates => getCoord1D
PROCEDURE, PASS:: init => initNode1DCart
PROCEDURE, PASS:: getCoordinates => getCoord1DCart
END TYPE meshNode1D
END TYPE meshNode1DCart
TYPE, PUBLIC, ABSTRACT, EXTENDS(meshEdge):: meshEdge1D
TYPE, PUBLIC, ABSTRACT, EXTENDS(meshEdge):: meshEdge1DCart
!Element coordinates
REAL(8):: x = 0.D0
!Connectivity to nodes
CLASS(meshNode), POINTER:: n1 => NULL()
CONTAINS
PROCEDURE, PASS:: init => initEdge1D
PROCEDURE, PASS:: getNodes => getNodes1D
PROCEDURE, PASS:: randPos => randPos1D
PROCEDURE, PASS:: init => initEdge1DCart
PROCEDURE, PASS:: getNodes => getNodes1DCart
PROCEDURE, PASS:: randPos => randPos1DCart
END TYPE meshEdge1D
END TYPE meshEdge1DCart
TYPE, PUBLIC, ABSTRACT, EXTENDS(meshVol):: meshVol1D
TYPE, PUBLIC, ABSTRACT, EXTENDS(meshVol):: meshVol1DCart
CONTAINS
PROCEDURE, PASS:: detJac => detJ1D
PROCEDURE, PASS:: invJac => invJ1D
PROCEDURE, PASS:: detJac => detJ1DCart
PROCEDURE, PASS:: invJac => invJ1DCart
PROCEDURE(fPsi_interface), DEFERRED, NOPASS:: fPsi
PROCEDURE(dPsi_interface), DEFERRED, NOPASS:: dPsi
PROCEDURE(partialDer_interface), DEFERRED, PASS:: partialDer
END TYPE meshVol1D
END TYPE meshVol1DCart
ABSTRACT INTERFACE
PURE FUNCTION fPsi_interface(xi) RESULT(fPsi)
@ -51,8 +51,8 @@ MODULE moduleMesh1D
END FUNCTION dPsi_interface
PURE SUBROUTINE partialDer_interface(self, dPsi, dx)
IMPORT meshVol1D
CLASS(meshVol1D), INTENT(in):: self
IMPORT meshVol1DCart
CLASS(meshVol1DCart), INTENT(in):: self
REAL(8), INTENT(in):: dPsi(1:,1:)
REAL(8), INTENT(out), DIMENSION(1):: dx
@ -60,7 +60,7 @@ MODULE moduleMesh1D
END INTERFACE
TYPE, PUBLIC, EXTENDS(meshVol1D):: meshVol1DSegm
TYPE, PUBLIC, EXTENDS(meshVol1DCart):: meshVol1DCartSegm
!Element coordinates
REAL(8):: x(1:2)
!Connectivity to nodes
@ -69,7 +69,7 @@ MODULE moduleMesh1D
CLASS(*), POINTER:: e1 => NULL(), e2 => NULL()
REAL(8):: arNodes(1:2)
CONTAINS
PROCEDURE, PASS:: init => initVol1DSegm
PROCEDURE, PASS:: init => initVol1DCartSegm
PROCEDURE, PASS:: area => areaSegm
PROCEDURE, NOPASS:: fPsi => fPsiSegm
PROCEDURE, NOPASS:: dPsi => dPsiSegm
@ -85,17 +85,17 @@ MODULE moduleMesh1D
PROCEDURE, PASS:: nextElement => nextElementSegm
PROCEDURE, PASS:: resetOutput => resetOutputSegm
END TYPE meshVol1DSegm
END TYPE meshVol1DCartSegm
CONTAINS
!NODE FUNCTIONS
!Init node element
SUBROUTINE initNode1D(self, n, r)
SUBROUTINE initNode1DCart(self, n, r)
USE moduleSpecies
USE moduleRefParam
IMPLICIT NONE
CLASS(meshNode1D), INTENT(out):: self
CLASS(meshNode1DCart), INTENT(out):: self
INTEGER, INTENT(in):: n
REAL(8), INTENT(in):: r(1:3)
@ -107,24 +107,24 @@ MODULE moduleMesh1D
!Allocates output
ALLOCATE(self%output(1:nSpecies))
END SUBROUTINE initNode1D
END SUBROUTINE initNode1DCart
PURE FUNCTION getCoord1D(self) RESULT(r)
PURE FUNCTION getCoord1DCart(self) RESULT(r)
IMPLICIT NONE
CLASS(meshNode1D), INTENT(in):: self
CLASS(meshNode1DCart), INTENT(in):: self
REAL(8):: r(1:3)
r = (/ self%x, 0.D0, 0.D0 /)
END FUNCTION getCoord1D
END FUNCTION getCoord1DCart
!EDGE FUNCTIONS
!Inits edge element
SUBROUTINE initEdge1D(self, n, p, bt, physicalSurface)
SUBROUTINE initEdge1DCart(self, n, p, bt, physicalSurface)
IMPLICIT NONE
CLASS(meshEdge1D), INTENT(out):: self
CLASS(meshEdge1DCart), INTENT(out):: self
INTEGER, INTENT(in):: n
INTEGER, INTENT(in):: p(:)
INTEGER, INTENT(in):: bt
@ -145,37 +145,37 @@ MODULE moduleMesh1D
!Physical Surface
self%physicalSurface = physicalSurface
END SUBROUTINE initEdge1D
END SUBROUTINE initEdge1DCart
!Get nodes from edge
PURE FUNCTION getNodes1D(self) RESULT(n)
PURE FUNCTION getNodes1DCart(self) RESULT(n)
IMPLICIT NONE
CLASS(meshEdge1D), INTENT(in):: self
CLASS(meshEdge1DCart), INTENT(in):: self
INTEGER, ALLOCATABLE:: n(:)
ALLOCATE(n(1))
n = (/ self%n1%n /)
END FUNCTION getNodes1D
END FUNCTION getNodes1DCart
!Calculates a 'random' position in edge
FUNCTION randPos1D(self) RESULT(r)
CLASS(meshEdge1D), INTENT(in):: self
FUNCTION randPos1DCart(self) RESULT(r)
CLASS(meshEdge1DCart), INTENT(in):: self
REAL(8):: r(1:3)
r = (/ self%x, 0.D0, 0.D0 /)
END FUNCTION randPos1D
END FUNCTION randPos1DCart
!VOLUME FUNCTIONS
!SEGMENT FUNCTIONS
!Init segment element
SUBROUTINE initVol1DSegm(self, n, p)
SUBROUTINE initVol1DCartSegm(self, n, p)
USE moduleRefParam
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(out):: self
CLASS(meshVol1DCartSegm), INTENT(out):: self
INTEGER, INTENT(in):: n
INTEGER, INTENT(in):: p(:)
REAL(8), DIMENSION(1:3):: r1, r2
@ -197,13 +197,13 @@ MODULE moduleMesh1D
CALL OMP_INIT_LOCK(self%lock)
END SUBROUTINE initVol1DSegm
END SUBROUTINE initVol1DCartSegm
!Computes element area
PURE SUBROUTINE areaSegm(self)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(inout):: self
CLASS(meshVol1DCartSegm), INTENT(inout):: self
REAL(8):: l !element length
REAL(8):: fPsi(1:2)
REAL(8):: detJ
@ -254,7 +254,7 @@ MODULE moduleMesh1D
PURE SUBROUTINE partialDerSegm(self, dPsi, dx)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
CLASS(meshVol1DCartSegm), INTENT(in):: self
REAL(8), INTENT(in):: dPsi(1:,1:)
REAL(8), INTENT(out), DIMENSION(1):: dx
@ -266,7 +266,7 @@ MODULE moduleMesh1D
PURE FUNCTION elemKSegm(self) RESULT(ke)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
CLASS(meshVol1DCartSegm), INTENT(in):: self
REAL(8):: ke(1:2,1:2)
REAL(8):: Xii(1:3)
REAL(8):: dPsi(1:1, 1:2)
@ -285,7 +285,7 @@ MODULE moduleMesh1D
PURE FUNCTION elemFSegm(self, source) RESULT(localF)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
CLASS(meshVol1DCartSegm), INTENT(in):: self
REAL(8), INTENT(in):: source(1:)
REAL(8), ALLOCATABLE:: localF(:)
REAL(8):: fPsi(1:2)
@ -326,7 +326,7 @@ MODULE moduleMesh1D
USE moduleSpecies
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
CLASS(meshVol1DCartSegm), INTENT(in):: self
CLASS(particle), INTENT(in):: part
TYPE(outputNode), POINTER:: vertex
REAL(8):: w_p(1:2)
@ -351,7 +351,7 @@ MODULE moduleMesh1D
PURE FUNCTION gatherEFSegm(self, xi) RESULT(EF)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
CLASS(meshVol1DCartSegm), INTENT(in):: self
REAL(8), INTENT(in):: xi(1:3)
REAL(8):: dPsi(1, 1:2)
REAL(8):: phi(1:2)
@ -373,7 +373,7 @@ MODULE moduleMesh1D
PURE FUNCTION getNodesSegm(self) RESULT(n)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
CLASS(meshVol1DCartSegm), INTENT(in):: self
INTEGER, ALLOCATABLE:: n(:)
ALLOCATE(n(1:2))
@ -384,7 +384,7 @@ MODULE moduleMesh1D
PURE FUNCTION phy2logSegm(self, r) RESULT(xN)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
CLASS(meshVol1DCartSegm), INTENT(in):: self
REAL(8), INTENT(in):: r(1:3)
REAL(8):: xN(1:3)
@ -397,7 +397,7 @@ MODULE moduleMesh1D
SUBROUTINE nextElementSegm(self, xi, nextElement)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
CLASS(meshVol1DCartSegm), INTENT(in):: self
REAL(8), INTENT(in):: xi(1:3)
CLASS(*), POINTER, INTENT(out):: nextElement
@ -418,7 +418,7 @@ MODULE moduleMesh1D
USE moduleOutput
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(inout):: self
CLASS(meshVol1DCartSegm), INTENT(inout):: self
INTEGER:: k
DO k = 1, nSpecies
@ -437,10 +437,10 @@ MODULE moduleMesh1D
!COMMON FUNCTIONS FOR 1D VOLUME ELEMENTS
!Computes the element Jacobian determinant
PURE FUNCTION detJ1D(self, xi, dPsi_in) RESULT(dJ)
PURE FUNCTION detJ1DCart(self, xi, dPsi_in) RESULT(dJ)
IMPLICIT NONE
CLASS(meshVol1D), INTENT(in):: self
CLASS(meshVol1DCart), INTENT(in):: self
REAL(8), INTENT(in):: xi(1:3)
REAL(8), INTENT(in), OPTIONAL:: dPsi_in(1:,1:)
REAL(8), ALLOCATABLE:: dPsi(:,:)
@ -458,13 +458,13 @@ MODULE moduleMesh1D
CALL self%partialDer(dPsi, dx)
dJ = dx(1)
END FUNCTION detJ1D
END FUNCTION detJ1DCart
!Computes the invers Jacobian
PURE FUNCTION invJ1D(self, xi, dPsi_in) RESULT(invJ)
PURE FUNCTION invJ1DCart(self, xi, dPsi_in) RESULT(invJ)
IMPLICIT NONE
CLASS(meshVol1D), INTENT(in):: self
CLASS(meshVol1DCart), INTENT(in):: self
REAL(8), INTENT(in):: xi(1:3)
REAL(8), INTENT(in), OPTIONAL:: dPsi_in(1:,1:)
REAL(8), ALLOCATABLE:: dPsi(:,:)
@ -482,8 +482,8 @@ MODULE moduleMesh1D
CALL self%partialDer(dPsi, dx)
invJ = 1.D0/dx(1)
END FUNCTION invJ1D
END FUNCTION invJ1DCart
END MODULE moduleMesh1D
END MODULE moduleMesh1DCart

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@ -1,24 +1,24 @@
MODULE moduleMesh1DBoundary
USE moduleMesh1D
MODULE moduleMesh1DCartBoundary
USE moduleMesh1DCart
TYPE, PUBLIC, EXTENDS(meshEdge1D):: meshEdge1DRef
TYPE, PUBLIC, EXTENDS(meshEdge1DCart):: meshEdge1DCartRef
CONTAINS
PROCEDURE, PASS:: fBoundary => reflection
END TYPE meshEdge1DRef
END TYPE meshEdge1DCartRef
TYPE, PUBLIC, EXTENDS(meshEdge1D):: meshEdge1DAbs
TYPE, PUBLIC, EXTENDS(meshEdge1DCart):: meshEdge1DCartAbs
CONTAINS
PROCEDURE, PASS:: fBoundary => absorption
END TYPE meshEdge1DAbs
END TYPE meshEdge1DCartAbs
CONTAINS
SUBROUTINE reflection(self, part)
USE moduleSpecies
IMPLICIT NONE
CLASS(meshEdge1DRef), INTENT(inout):: self
CLASS(meshEdge1DCartRef), INTENT(inout):: self
CLASS(particle), INTENT(inout):: part
part%v(1) = -part%v(1)
@ -30,11 +30,11 @@ MODULE moduleMesh1DBoundary
USE moduleSpecies
IMPLICIT NONE
CLASS(meshEdge1DAbs), INTENT(inout):: self
CLASS(meshEdge1DCartAbs), INTENT(inout):: self
CLASS(particle), INTENT(inout):: part
part%n_in = .FALSE.
END SUBROUTINE absorption
END MODULE moduleMesh1DBoundary
END MODULE moduleMesh1DCartBoundary

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@ -1,13 +1,13 @@
MODULE moduleMesh1DRead
MODULE moduleMesh1DCartRead
USE moduleMesh
USE moduleMesh1D
USE moduleMesh1DBoundary
USE moduleMesh1DCart
USE moduleMesh1DCartBoundary
!TODO: make this abstract to allow different mesh formats
TYPE, EXTENDS(meshGeneric):: mesh1DGeneric
TYPE, EXTENDS(meshGeneric):: mesh1DCartGeneric
CONTAINS
PROCEDURE, PASS:: init => init1DMesh
PROCEDURE, PASS:: readMesh => readMesh1D
PROCEDURE, PASS:: init => init1DCartMesh
PROCEDURE, PASS:: readMesh => readMesh1DCart
END TYPE
@ -18,12 +18,12 @@ MODULE moduleMesh1DRead
CONTAINS
!Init 1D mesh
SUBROUTINE init1DMesh(self, meshFormat)
SUBROUTINE init1DCartMesh(self, meshFormat)
USE moduleMesh
USE moduleErrors
IMPLICIT NONE
CLASS(mesh1DGeneric), INTENT(out):: self
CLASS(mesh1DCartGeneric), INTENT(out):: self
CHARACTER(:), ALLOCATABLE, INTENT(in):: meshFormat
SELECT CASE(meshFormat)
@ -33,18 +33,18 @@ MODULE moduleMesh1DRead
self%printEM => printEMGmsh
CASE DEFAULT
CALL criticalError("Mesh type " // meshFormat // " not supported.", "init1D")
CALL criticalError("Mesh type " // meshFormat // " not supported.", "init1DCart")
END SELECT
END SUBROUTINE init1DMesh
END SUBROUTINE init1DCartMesh
!Reads 1D mesh
SUBROUTINE readMesh1D(self, filename)
SUBROUTINE readMesh1DCart(self, filename)
USE moduleBoundary
IMPLICIT NONE
CLASS(mesh1DGeneric), INTENT(inout):: self
CLASS(mesh1DCartGeneric), INTENT(inout):: self
CHARACTER(:), ALLOCATABLE, INTENT(in):: filename
REAL(8):: x
INTEGER:: p(1:2)
@ -70,7 +70,7 @@ MODULE moduleMesh1DRead
!Read nodes coordinates. Only relevant for x
DO e = 1, self%numNodes
READ(10, *) n, x
ALLOCATE(meshNode1D:: self%nodes(n)%obj)
ALLOCATE(meshNode1DCart:: self%nodes(n)%obj)
CALL self%nodes(n)%obj%init(n, (/ x, 0.D0, 0.D0 /))
END DO
@ -109,10 +109,10 @@ MODULE moduleMesh1DRead
bt = getBoundaryId(boundaryType)
SELECT CASE(boundary(bt)%obj%boundaryType)
CASE ('reflection')
ALLOCATE(meshEdge1DRef:: self%edges(e)%obj)
ALLOCATE(meshEdge1DCartRef:: self%edges(e)%obj)
CASE ('absorption')
ALLOCATE(meshEdge1DAbs:: self%edges(e)%obj)
ALLOCATE(meshEdge1DCartAbs:: self%edges(e)%obj)
END SELECT
@ -123,7 +123,7 @@ MODULE moduleMesh1DRead
!Read and initialize volumes
DO e = 1, self%numVols
READ(10, *) n, elemType, eTemp, eTemp, eTemp, p(1:2)
ALLOCATE(meshVol1DSegm:: self%vols(e)%obj)
ALLOCATE(meshVol1DCartSegm:: self%vols(e)%obj)
CALL self%vols(e)%obj%init(n - self%numEdges, p(1:2))
END DO
@ -152,7 +152,7 @@ MODULE moduleMesh1DRead
END DO
END SUBROUTINE readMesh1D
END SUBROUTINE readMesh1DCart
SUBROUTINE connectedVolVol(elemA, elemB)
IMPLICIT NONE
@ -161,9 +161,9 @@ MODULE moduleMesh1DRead
CLASS(meshVol), INTENT(inout):: elemB
SELECT TYPE(elemA)
TYPE IS(meshVol1DSegm)
TYPE IS(meshVol1DCartSegm)
SELECT TYPE(elemB)
TYPE IS(meshVol1DSegm)
TYPE IS(meshVol1DCartSegm)
CALL connectedSegmSegm(elemA, elemB)
END SELECT
@ -175,8 +175,8 @@ MODULE moduleMesh1DRead
SUBROUTINE connectedSegmSegm(elemA, elemB)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(inout), TARGET:: elemA
CLASS(meshVol1DSegm), INTENT(inout), TARGET:: elemB
CLASS(meshVol1DCartSegm), INTENT(inout), TARGET:: elemA
CLASS(meshVol1DCartSegm), INTENT(inout), TARGET:: elemB
IF (.NOT. ASSOCIATED(elemA%e1) .AND. &
elemA%n2%n == elemB%n1%n) THEN
@ -202,9 +202,9 @@ MODULE moduleMesh1DRead
CLASS(meshEdge), INTENT(inout):: elemB
SELECT TYPE(elemA)
TYPE IS (meshVol1DSegm)
TYPE IS (meshVol1DCartSegm)
SELECT TYPE(elemB)
CLASS IS(meshEdge1D)
CLASS IS(meshEdge1DCart)
CALL connectedSegmEdge(elemA, elemB)
END SELECT
@ -216,8 +216,8 @@ MODULE moduleMesh1DRead
SUBROUTINE connectedSegmEdge(elemA, elemB)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(inout), TARGET:: elemA
CLASS(meshEdge1D), INTENT(inout), TARGET:: elemB
CLASS(meshVol1DCartSegm), INTENT(inout), TARGET:: elemA
CLASS(meshEdge1DCart), INTENT(inout), TARGET:: elemB
IF (.NOT. ASSOCIATED(elemA%e1) .AND. &
elemA%n2%n == elemB%n1%n) THEN
@ -247,7 +247,7 @@ MODULE moduleMesh1DRead
INTEGER:: n(1:2)
SELECT TYPE(elem)
TYPE IS(meshVol1DSegm)
TYPE IS(meshVol1DCartSegm)
localK = elem%elemK()
n = (/ elem%n1%n, elem%n2%n /)
@ -265,4 +265,4 @@ MODULE moduleMesh1DRead
END SUBROUTINE constructGlobalK
END MODULE moduleMesh1DRead
END MODULE moduleMesh1DCartRead