!Implementation for 1D solver for charged particles. Added a 1D case for

testing. Still, no formal test has been performed so issues may appear.
This commit is contained in:
Jorge Gonzalez 2020-12-07 09:12:30 +01:00
commit d69b59143d
14 changed files with 3229 additions and 403 deletions

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@ -0,0 +1,45 @@
{
"output": {
"path": "./runs/1D_Cathode/",
"trigger": 100,
"cpuTime": false,
"numColl": false,
"EMField": true
},
"reference": {
"density": 1.0e16,
"mass": 9.109e-31,
"temperature": 2500.0
},
"geometry": {
"type": "1DCart",
"meshType": "gmsh",
"meshFile": "mesh.msh"
},
"species": [
{"name": "Electron", "type": "charged", "mass": 9.109e-31, "charge":-1.0, "weight": 1.0e1}
],
"boundary": [
{"name": "Cathode", "type": "absorption", "physicalSurface": 1},
{"name": "Infinite", "type": "absorption", "physicalSurface": 2}
],
"boundaryEM": [
{"name": "Cathode", "type": "dirichlet", "potential": 0.0, "physicalSurface": 1},
{"name": "Infinite", "type": "dirichlet", "potential": 600.0, "physicalSurface": 2}
],
"inject": [
{"name": "Cathode Electron", "species": "Electron", "flow": 9.0e-5, "units": "A", "v": 27500.0, "T": [2500.0, 2500.0, 2500.0], "n": [ 1, 0, 0], "physicalSurface": 1}
],
"case": {
"tau": [1.0e-11],
"time": 1.0e-6,
"pusher": ["1DCartCharged"],
"EMSolver": "Electrostatic"
},
"parallel": {
"OpenMP":{
"nThreads": 1
}
}
}

2012
runs/1D_Cathode/mesh.msh Normal file

File diff suppressed because it is too large Load diff

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@ -4,7 +4,8 @@ OBJECTS = $(OBJDIR)/moduleMesh.o $(OBJDIR)/moduleCompTime.o $(OBJDIR)/moduleSolv
$(OBJDIR)/moduleMeshCyl.o $(OBJDIR)/moduleMeshCylRead.o $(OBJDIR)/moduleMeshCylBoundary.o \ $(OBJDIR)/moduleMeshCyl.o $(OBJDIR)/moduleMeshCylRead.o $(OBJDIR)/moduleMeshCylBoundary.o \
$(OBJDIR)/moduleBoundary.o $(OBJDIR)/moduleCaseParam.o $(OBJDIR)/moduleRefParam.o \ $(OBJDIR)/moduleBoundary.o $(OBJDIR)/moduleCaseParam.o $(OBJDIR)/moduleRefParam.o \
$(OBJDIR)/moduleCollisions.o $(OBJDIR)/moduleTable.o $(OBJDIR)/moduleParallel.o \ $(OBJDIR)/moduleCollisions.o $(OBJDIR)/moduleTable.o $(OBJDIR)/moduleParallel.o \
$(OBJDIR)/moduleEM.o $(OBJDIR)/moduleEM.o $(OBJDIR)/moduleMesh1D.o $(OBJDIR)/moduleMesh1DRead.o \
$(OBJDIR)/moduleMesh1DBoundary.o
all: $(OUTPUT) all: $(OUTPUT)

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@ -3,14 +3,15 @@ OBJS = moduleCaseParam.o moduleCompTime.o moduleList.o\
moduleMesh.o moduleMeshCyl.o moduleMeshCylBoundary.o\ moduleMesh.o moduleMeshCyl.o moduleMeshCylBoundary.o\
moduleMeshCylRead.o moduleOutput.o moduleInput.o \ moduleMeshCylRead.o moduleOutput.o moduleInput.o \
moduleSolver.o moduleCollisions.o moduleTable.o \ moduleSolver.o moduleCollisions.o moduleTable.o \
moduleParallel.o moduleEM.o moduleParallel.o moduleEM.o moduleMesh1D.o \
moduleMesh1DBoundary.o moduleMesh1DRead.o
all: $(OBJS) all: $(OBJS)
moduleCollisions.o: moduleTable.o moduleSpecies.o moduleRefParam.o moduleConstParam.o moduleMeshCyl.f95 moduleCollisions.o: moduleTable.o moduleSpecies.o moduleRefParam.o moduleConstParam.o moduleMeshCyl.f95
$(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@ $(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@
moduleInput.o: moduleParallel.o moduleRefParam.o moduleCaseParam.o moduleSolver.o moduleInject.o moduleBoundary.o moduleMesh.o moduleMeshCylRead.o moduleErrors.o moduleSpecies.o moduleInput.f95 moduleInput.o: moduleParallel.o moduleRefParam.o moduleCaseParam.o moduleSolver.o moduleInject.o moduleBoundary.o moduleMesh.o moduleMeshCylRead.o moduleMesh1DRead.o moduleErrors.o moduleSpecies.o moduleInput.f95
$(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@ $(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@
moduleInject.o: moduleSpecies.o moduleSolver.o moduleMesh.o moduleMeshCyl.o moduleInject.f95 moduleInject.o: moduleSpecies.o moduleSolver.o moduleMesh.o moduleMeshCyl.o moduleInject.f95
@ -19,7 +20,7 @@ moduleInject.o: moduleSpecies.o moduleSolver.o moduleMesh.o moduleMeshCyl.o modu
moduleList.o: moduleSpecies.o moduleErrors.o moduleList.f95 moduleList.o: moduleSpecies.o moduleErrors.o moduleList.f95
$(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@ $(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@
moduleMesh.o: moduleOutput.o moduleList.o moduleSpecies.o moduleMesh.f95 moduleMesh.o: moduleCollisions.o moduleOutput.o moduleList.o moduleSpecies.o moduleMesh.f95
$(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@ $(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@
moduleMeshCyl.o: moduleRefParam.o moduleCollisions.o moduleOutput.o moduleMesh.o moduleMeshCyl.f95 moduleMeshCyl.o: moduleRefParam.o moduleCollisions.o moduleOutput.o moduleMesh.o moduleMeshCyl.f95
@ -31,6 +32,15 @@ moduleMeshCylBoundary.o: moduleMeshCyl.o moduleMeshCylBoundary.f95
moduleMeshCylRead.o: moduleBoundary.o moduleMeshCyl.o moduleMeshCylBoundary.o moduleMeshCylRead.f95 moduleMeshCylRead.o: moduleBoundary.o moduleMeshCyl.o moduleMeshCylBoundary.o moduleMeshCylRead.f95
$(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@ $(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@
moduleMesh1D.o: moduleRefParam.o moduleCollisions.o moduleOutput.o moduleMesh.o moduleMesh1D.f95
$(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@
moduleMesh1DBoundary.o: moduleMesh1D.o moduleMesh1DBoundary.f95
$(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@
moduleMesh1DRead.o: moduleBoundary.o moduleMesh1D.o moduleMesh1DBoundary.o moduleMesh1DRead.f95
$(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@
moduleOutput.o: moduleSpecies.o moduleRefParam.o moduleOutput.f95 moduleOutput.o: moduleSpecies.o moduleRefParam.o moduleOutput.f95
$(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@ $(FC) $(FCFLAGS) -c $(subst .o,.f95,$@) -o $(OBJDIR)/$@

View file

@ -93,8 +93,6 @@ MODULE moduleEM
END DO END DO
!If there is charge in the nodes, compute the local F vector
IF (ANY(rho > 0.D0)) THEN
!Calculates local F vector !Calculates local F vector
localF = mesh%vols(e)%obj%elemF(rho) localF = mesh%vols(e)%obj%elemF(rho)
@ -106,9 +104,6 @@ MODULE moduleEM
END DO END DO
DEALLOCATE(localF) DEALLOCATE(localF)
END IF
DEALLOCATE(nodes, rho) DEALLOCATE(nodes, rho)
END DO END DO

View file

@ -28,7 +28,6 @@ MODULE moduleInject
!Initialize an injection of particles !Initialize an injection of particles
SUBROUTINE initInject(self, i, v, n, T, flow, units, sp, physicalSurface) SUBROUTINE initInject(self, i, v, n, T, flow, units, sp, physicalSurface)
USE moduleMesh USE moduleMesh
USE moduleMeshCyl
USE moduleRefParam USE moduleRefParam
USE moduleConstParam USE moduleConstParam
USE moduleSpecies USE moduleSpecies
@ -67,7 +66,7 @@ MODULE moduleInject
self%nParticles = self%nParticles * solver%pusher(sp)%every self%nParticles = self%nParticles * solver%pusher(sp)%every
self%sp = sp self%sp = sp
self%v = self%v * self%n self%v = self%vMod * self%n
self%vTh = DSQRT(self%T/species(self%sp)%obj%m) self%vTh = DSQRT(self%T/species(self%sp)%obj%m)
!Gets the edge elements from which particles are injected !Gets the edge elements from which particles are injected
@ -85,11 +84,6 @@ MODULE moduleInject
IF (mesh%edges(e)%obj%physicalSurface == physicalSurface) THEN IF (mesh%edges(e)%obj%physicalSurface == physicalSurface) THEN
et = et + 1 et = et + 1
self%edges(et) = mesh%edges(e)%obj%n self%edges(et) = mesh%edges(e)%obj%n
! SELECT TYPE(edge => mesh%edges(e)%obj)
! CLASS IS (meshEdgeCyl)
! self%weight(et) = (edge%r(1)+edge%r(2))/2.D0
!
! END SELECT
END IF END IF
@ -143,7 +137,6 @@ MODULE moduleInject
USE moduleSpecies USE moduleSpecies
USE moduleSolver USE moduleSolver
USE moduleMesh USE moduleMesh
USE moduleMeshCyl
IMPLICIT NONE IMPLICIT NONE
CLASS(injectGeneric), INTENT(in):: self CLASS(injectGeneric), INTENT(in):: self
@ -178,13 +171,6 @@ MODULE moduleInject
!$OMP DO !$OMP DO
DO n = nMin, nMax DO n = nMin, nMax
!Select edge randomly from which inject particle
! randomX = RAND()*self%sumWeight
! DO j = 1, self%nEdges
! IF (randomX < self%weight(j)) EXIT
! randomX = randomX - self%weight(j)
!
! END DO
randomX = INT(DBLE(self%nEdges-1)*RAND()) + 1 randomX = INT(DBLE(self%nEdges-1)*RAND()) + 1
randomEdge => mesh%edges(self%edges(randomX))%obj randomEdge => mesh%edges(self%edges(randomX))%obj
@ -203,11 +189,8 @@ MODULE moduleInject
vBC(self%v(2), self%vTh(2)), & vBC(self%v(2), self%vTh(2)), &
vBC(self%v(3), self%vTh(3)) /) vBC(self%v(3), self%vTh(3)) /)
IF (solver%pusher(self%sp)%pushSpecies) THEN
!Push new particle !Push new particle
CALL solver%pusher(self%sp)%pushParticle(partInj(n)) CALL solver%pusher(self%sp)%pushParticle(partInj(n))
END IF
!Assign cell to new particle !Assign cell to new particle
CALL solver%updateParticleCell(partInj(n)) CALL solver%updateParticleCell(partInj(n))

View file

@ -45,9 +45,6 @@ MODULE moduleInput
CALL verboseError('Reading Case Parameters...') CALL verboseError('Reading Case Parameters...')
CALL readCase(config) CALL readCase(config)
!Read boundary for EM field
CALL readEMBoundary(config)
!Read injection of particles !Read injection of particles
CALL verboseError('Reading Interactions between species...') CALL verboseError('Reading Interactions between species...')
CALL readInject(config) CALL readInject(config)
@ -164,6 +161,11 @@ MODULE moduleInput
!Gets the solver for the electromagnetic field !Gets the solver for the electromagnetic field
CALL config%get(object // '.EMSolver', EMType, found) CALL config%get(object // '.EMSolver', EMType, found)
CALL solver%initEM(EMType) CALL solver%initEM(EMType)
SELECT CASE(EMType)
CASE("Electrostatic")
CALL readEMBoundary(config)
END SELECT
!Gest the non-analogue scheme !Gest the non-analogue scheme
CALL config%get(object // '.NAScheme', NAType, found) CALL config%get(object // '.NAScheme', NAType, found)
@ -351,7 +353,8 @@ MODULE moduleInput
!Read the geometry (mesh) for the case !Read the geometry (mesh) for the case
SUBROUTINE readGeometry(config) SUBROUTINE readGeometry(config)
USE moduleMesh USE moduleMesh
USE moduleMeshCylRead USE moduleMeshCylRead, ONLY: meshCylGeneric
USE moduleMesh1DRead, ONLY: mesh1DGeneric
USE moduleErrors USE moduleErrors
USE moduleOutput USE moduleOutput
USE json_module USE json_module
@ -369,6 +372,15 @@ MODULE moduleInput
!Creates a 2D cylindrical mesh !Creates a 2D cylindrical mesh
ALLOCATE(meshCylGeneric:: mesh) ALLOCATE(meshCylGeneric:: mesh)
CASE ("1DCart")
!Creates a 1D cartesian mesh
ALLOCATE(mesh1DGeneric:: mesh)
CASE DEFAULT
CALL criticalError("Geometry type " // geometryType // " not supported.", "readGeometry")
END SELECT
!Gets the type of mesh !Gets the type of mesh
CALL config%get('geometry.meshType', meshType, found) CALL config%get('geometry.meshType', meshType, found)
SELECT CASE(meshType) SELECT CASE(meshType)
@ -380,15 +392,11 @@ MODULE moduleInput
CALL criticalError("Mesh type " // meshType // " not supported.", "readGeometry") CALL criticalError("Mesh type " // meshType // " not supported.", "readGeometry")
END SELECT END SELECT
!Reads the mesh !Reads the mesh
fullpath = path // meshFile fullpath = path // meshFile
CALL mesh%readMesh(fullPath) CALL mesh%readMesh(fullPath)
CASE DEFAULT
CALL criticalError("Geometry type " // geometryType // " not supported.", "readGeometry")
END SELECT
END SUBROUTINE readGeometry END SUBROUTINE readGeometry
SUBROUTINE readEMBoundary(config) SUBROUTINE readEMBoundary(config)

View file

@ -130,11 +130,11 @@ MODULE moduleMesh
PROCEDURE(gatherEF_interface), DEFERRED, PASS:: gatherEF PROCEDURE(gatherEF_interface), DEFERRED, PASS:: gatherEF
PROCEDURE(getNodesVol_interface), DEFERRED, PASS:: getNodes PROCEDURE(getNodesVol_interface), DEFERRED, PASS:: getNodes
PROCEDURE(elemF_interface), DEFERRED, PASS:: elemF PROCEDURE(elemF_interface), DEFERRED, PASS:: elemF
PROCEDURE(findCell_interface), DEFERRED, PASS:: findCell PROCEDURE, PASS:: findCell
PROCEDURE(phy2log_interface), DEFERRED, PASS:: phy2log PROCEDURE(phy2log_interface), DEFERRED, PASS:: phy2log
PROCEDURE(inside_interface), DEFERRED, NOPASS:: inside PROCEDURE(inside_interface), DEFERRED, NOPASS:: inside
PROCEDURE(nextElement_interface), DEFERRED, PASS:: nextElement PROCEDURE(nextElement_interface), DEFERRED, PASS:: nextElement
PROCEDURE(collision_interface), DEFERRED, PASS:: collision PROCEDURE, PASS:: collision
PROCEDURE(resetOutput_interface), DEFERRED, PASS:: resetOutput PROCEDURE(resetOutput_interface), DEFERRED, PASS:: resetOutput
END TYPE meshVol END TYPE meshVol
@ -189,16 +189,6 @@ MODULE moduleMesh
END SUBROUTINE nextElement_interface END SUBROUTINE nextElement_interface
SUBROUTINE findCell_interface(self, part, oldCell)
USE moduleSpecies
IMPORT:: meshVol
CLASS(meshVol), INTENT(inout):: self
CLASS(meshVol), OPTIONAL, INTENT(in):: oldCell
CLASS(particle), INTENT(inout), TARGET:: part
END SUBROUTINE findCell_interface
PURE FUNCTION phy2log_interface(self,r) RESULT(xN) PURE FUNCTION phy2log_interface(self,r) RESULT(xN)
IMPORT:: meshVol IMPORT:: meshVol
CLASS(meshVol), INTENT(in):: self CLASS(meshVol), INTENT(in):: self
@ -249,10 +239,10 @@ MODULE moduleMesh
INTEGER, ALLOCATABLE, DIMENSION(:,:):: IPIV INTEGER, ALLOCATABLE, DIMENSION(:,:):: IPIV
CONTAINS CONTAINS
PROCEDURE(readMesh_interface), PASS, DEFERRED:: readMesh PROCEDURE(readMesh_interface), DEFERRED, PASS:: readMesh
PROCEDURE(printOutput_interface), PASS, DEFERRED:: printOutput PROCEDURE, PASS:: printOutput
PROCEDURE(printColl_interface), PASS, DEFERRED:: printColl PROCEDURE, PASS:: printColl
PROCEDURE(printEM_interface), PASS, DEFERRED:: printEM PROCEDURE, PASS:: printEM
END TYPE meshGeneric END TYPE meshGeneric
@ -266,15 +256,6 @@ MODULE moduleMesh
END SUBROUTINE readMesh_interface END SUBROUTINE readMesh_interface
!Prints output variables
SUBROUTINE printOutput_interface(self, t)
IMPORT meshGeneric
CLASS(meshGeneric), INTENT(in):: self
INTEGER, INTENT(in):: t
END SUBROUTINE printOutput_interface
!Prints number of collisions !Prints number of collisions
SUBROUTINE printColl_interface(self, t) SUBROUTINE printColl_interface(self, t)
IMPORT meshGeneric IMPORT meshGeneric
@ -297,4 +278,309 @@ MODULE moduleMesh
!Generic mesh !Generic mesh
CLASS(meshGeneric), ALLOCATABLE, TARGET:: mesh CLASS(meshGeneric), ALLOCATABLE, TARGET:: mesh
CONTAINS
!Find next cell for particle
RECURSIVE SUBROUTINE findCell(self, part, oldCell)
USE moduleSpecies
USE OMP_LIB
IMPLICIT NONE
CLASS(meshVol), INTENT(inout):: self
CLASS(meshVol), OPTIONAL, INTENT(in):: oldCell
CLASS(particle), INTENT(inout), TARGET:: part
REAL(8):: xi(1:3)
CLASS(*), POINTER:: nextElement
xi = self%phy2log(part%r)
!Checks if particle is inside 'self' cell
IF (self%inside(xi)) THEN
part%vol = self%n
part%xi = xi
part%n_in = .TRUE.
!Assign particle to listPart_in
CALL OMP_SET_LOCK(self%lock)
CALL self%listPart_in%add(part)
self%totalWeight = self%totalWeight + part%weight
CALL OMP_UNSET_LOCK(self%lock)
ELSE
!If not, searches for a neighbour and repeats the process.
CALL self%nextElement(xi, nextElement)
!Defines the next step
SELECT TYPE(nextElement)
CLASS IS(meshVol)
!Particle moved to new cell, repeat find procedure
CALL nextElement%findCell(part, self)
CLASS IS (meshEdge)
!Particle encountered an edge, execute boundary
CALL nextElement%fBoundary(part)
!If particle is still inside the domain, call findCell
IF (part%n_in) THEN
IF(PRESENT(oldCell)) THEN
CALL self%findCell(part, oldCell)
ELSE
CALL self%findCell(part)
END IF
END IF
CLASS DEFAULT
WRITE(*,*) "ERROR, CHECK findCell"
END SELECT
END IF
END SUBROUTINE findCell
!Computes collisions in element
SUBROUTINE collision(self)
USE moduleCollisions
USE moduleSpecies
USE moduleList
use moduleRefParam
IMPLICIT NONE
CLASS(meshVol), INTENT(inout):: self
INTEGER:: nPart !Number of particles inside the cell
REAL(8):: pMax !Maximum probability of collision
INTEGER:: rnd !random index
TYPE(particle), POINTER:: part_i, part_j
INTEGER:: n !collision
INTEGER:: ij, k
REAL(8):: sigmaVrelMaxNew
TYPE(pointerArray), ALLOCATABLE:: partTemp(:)
self%nColl = 0
nPart = self%listPart_in%amount
IF (nPart > 1) THEN
pMax = self%totalWeight*self%sigmaVrelMax*tauMin/self%volume
self%nColl = INT(REAL(nPart)*pMax*0.5D0)
!Converts the list of particles to an array for easy access
IF (self%nColl > 0) THEN
partTemp = self%listPart_in%convert2Array()
END IF
DO n = 1, self%nColl
!Select random numbers
rnd = 1 + FLOOR(nPart*RAND())
part_i => partTemp(rnd)%part
rnd = 1 + FLOOR(nPart*RAND())
part_j => partTemp(rnd)%part
ij = interactionIndex(part_i%sp, part_j%sp)
sigmaVrelMaxNew = 0.D0
DO k = 1, interactionMatrix(ij)%amount
CALL interactionMatrix(ij)%collisions(k)%obj%collide(self%sigmaVrelMax, sigmaVrelMaxNew, part_i, part_j)
END DO
!Update maximum cross section*v_rel per each collision
IF (sigmaVrelMaxNew > self%sigmaVrelMax) THEN
self%sigmaVrelMax = sigmaVrelMaxNew
END IF
END DO
END IF
self%totalWeight = 0.D0
!Reset output in nodes
CALL self%resetOutput()
!Erase the list of particles inside the cell
CALL self%listPart_in%erase()
END SUBROUTINE collision
SUBROUTINE printOutput(self, t)
USE moduleRefParam
USE moduleSpecies
USE moduleOutput
IMPLICIT NONE
CLASS(meshGeneric), INTENT(in):: self
INTEGER, INTENT(in):: t
INTEGER:: n, i
TYPE(outputFormat):: output(1:self%numNodes)
REAL(8):: time
CHARACTER(:), ALLOCATABLE:: fileName
CHARACTER (LEN=6):: tstring !TODO: Review to allow any number of iterations
time = DBLE(t)*tauMin*ti_ref
DO i = 1, nSpecies
WRITE(tstring, '(I6.6)') t
fileName='OUTPUT_' // tstring// '_' // species(i)%obj%name // '.msh'
WRITE(*, "(6X,A15,A)") "Creating file: ", fileName
OPEN (60, file = path // folder // '/' // fileName)
WRITE(60, "(A)") '$MeshFormat'
WRITE(60, "(A)") '2.2 0 8'
WRITE(60, "(A)") '$EndMeshFormat'
WRITE(60, "(A)") '$NodeData'
WRITE(60, "(A)") '1'
WRITE(60, "(A)") '"Density (m^-3)"'
WRITE(60, *) 1
WRITE(60, *) time
WRITE(60, *) 3
WRITE(60, *) t
WRITE(60, *) 1
WRITE(60, *) self%numNodes
DO n=1, self%numNodes
CALL calculateOutput(self%nodes(n)%obj%output(i), output(n), self%nodes(n)%obj%v, species(i)%obj)
WRITE(60, "(I6,ES20.6E3)") n, output(n)%density
END DO
WRITE(60, "(A)") '$EndNodeData'
WRITE(60, "(A)") '$NodeData'
WRITE(60, "(A)") '1'
WRITE(60, "(A)") '"Velocity (m/s)"'
WRITE(60, *) 1
WRITE(60, *) time
WRITE(60, *) 3
WRITE(60, *) t
WRITE(60, *) 3
WRITE(60, *) self%numNodes
DO n=1, self%numNodes
WRITE(60, "(I6,3(ES20.6E3))") n, output(n)%velocity
END DO
WRITE(60, "(A)") '$EndNodeData'
WRITE(60, "(A)") '$NodeData'
WRITE(60, "(A)") '1'
WRITE(60, "(A)") '"Pressure (Pa)"'
WRITE(60, *) 1
WRITE(60, *) time
WRITE(60, *) 3
WRITE(60, *) t
WRITE(60, *) 1
WRITE(60, *) self%numNodes
DO n=1, self%numNodes
WRITE(60, "(I6,3(ES20.6E3))") n, output(n)%pressure
END DO
WRITE(60, "(A)") '$EndNodeData'
WRITE(60, "(A)") '$NodeData'
WRITE(60, "(A)") '1'
WRITE(60, "(A)") '"Temperature (K)"'
WRITE(60, *) 1
WRITE(60, *) time
WRITE(60, *) 3
WRITE(60, *) t
WRITE(60, *) 1
WRITE(60, *) self%numNodes
DO n=1, self%numNodes
WRITE(60, "(I6,3(ES20.6E3))") n, output(n)%temperature
END DO
WRITE(60, "(A)") '$EndNodeData'
CLOSE (60)
END DO
END SUBROUTINE printOutput
SUBROUTINE printColl(self, t)
USE moduleRefParam
USE moduleCaseParam
USE moduleOutput
IMPLICIT NONE
CLASS(meshGeneric), INTENT(in):: self
INTEGER, INTENT(in):: t
INTEGER:: n
REAL(8):: time
CHARACTER(:), ALLOCATABLE:: fileName
CHARACTER (LEN=6):: tstring !TODO: Review to allow any number of iterations
IF (collOutput) THEN
time = DBLE(t)*tauMin*ti_ref
WRITE(tstring, '(I6.6)') t
fileName='OUTPUT_' // tstring// '_Collisions.msh'
WRITE(*, "(6X,A15,A)") "Creating file: ", fileName
OPEN (60, file = path // folder // '/' // fileName)
WRITE(60, "(A)") '$MeshFormat'
WRITE(60, "(A)") '2.2 0 8'
WRITE(60, "(A)") '$EndMeshFormat'
WRITE(60, "(A)") '$ElementData'
WRITE(60, "(A)") '1'
WRITE(60, "(A)") '"Collisions"'
WRITE(60, *) 1
WRITE(60, *) time
WRITE(60, *) 3
WRITE(60, *) t
WRITE(60, *) 1
WRITE(60, *) self%numVols
DO n=1, self%numVols
WRITE(60, "(I6,I10)") n + self%numEdges, self%vols(n)%obj%nColl
END DO
WRITE(60, "(A)") '$EndElementData'
CLOSE(60)
END IF
END SUBROUTINE printColl
SUBROUTINE printEM(self, t)
USE moduleRefParam
USE moduleCaseParam
USE moduleOutput
IMPLICIT NONE
CLASS(meshGeneric), INTENT(in):: self
INTEGER, INTENT(in):: t
INTEGER:: n, e
REAL(8):: time
CHARACTER(:), ALLOCATABLE:: fileName
CHARACTER (LEN=6):: tstring !TODO: Review to allow any number of iterations
REAL(8):: xi(1:3)
xi = (/ 0.D0, 0.D0, 0.D0 /)
IF (emOutput) THEN
time = DBLE(t)*tauMin*ti_ref
WRITE(tstring, '(I6.6)') t
fileName='OUTPUT_' // tstring// '_EMField.msh'
WRITE(*, "(6X,A15,A)") "Creating file: ", fileName
OPEN (20, file = path // folder // '/' // fileName)
WRITE(20, "(A)") '$MeshFormat'
WRITE(20, "(A)") '2.2 0 8'
WRITE(20, "(A)") '$EndMeshFormat'
WRITE(20, "(A)") '$NodeData'
WRITE(20, "(A)") '1'
WRITE(20, "(A)") '"Potential (V)"'
WRITE(20, *) 1
WRITE(20, *) time
WRITE(20, *) 3
WRITE(20, *) t
WRITE(20, *) 1
WRITE(20, *) self%numNodes
DO n=1, self%numNodes
WRITE(20, *) n, self%nodes(n)%obj%emData%phi*Volt_ref
END DO
WRITE(20, "(A)") '$EndNodeData'
WRITE(20, "(A)") '$ElementData'
WRITE(20, "(A)") '1'
WRITE(20, "(A)") '"Electric Field (V/m)"'
WRITE(20, *) 1
WRITE(20, *) time
WRITE(20, *) 3
WRITE(20, *) t
WRITE(20, *) 3
WRITE(20, *) self%numVols
DO e=1, self%numVols
WRITE(20, *) e+self%numEdges, self%vols(e)%obj%gatherEF(xi)*EF_ref
END DO
WRITE(20, "(A)") '$EndElementData'
CLOSE(20)
END IF
END SUBROUTINE printEM
END MODULE moduleMesh END MODULE moduleMesh

View file

@ -0,0 +1,489 @@
!moduleMesh1D: 1D cartesian module
! x == x
! y == unused
! z == unused
MODULE moduleMesh1D
USE moduleMesh
IMPLICIT NONE
TYPE, PUBLIC, EXTENDS(meshNode):: meshNode1D
!Element coordinates
REAL(8):: x = 0.D0
CONTAINS
PROCEDURE, PASS:: init => initNode1D
PROCEDURE, PASS:: getCoordinates => getCoord1D
END TYPE meshNode1D
TYPE, PUBLIC, ABSTRACT, EXTENDS(meshEdge):: meshEdge1D
!Element coordinates
REAL(8):: x = 0.D0
!Connectivity to nodes
CLASS(meshNode), POINTER:: n1 => NULL()
CONTAINS
PROCEDURE, PASS:: init => initEdge1D
PROCEDURE, PASS:: getNodes => getNodes1D
PROCEDURE, PASS:: randPos => randPos1D
END TYPE meshEdge1D
TYPE, PUBLIC, ABSTRACT, EXTENDS(meshVol):: meshVol1D
CONTAINS
PROCEDURE, PASS:: detJac => detJ1D
PROCEDURE, PASS:: invJac => invJ1D
PROCEDURE(fPsi_interface), DEFERRED, NOPASS:: fPsi
PROCEDURE(dPsi_interface), DEFERRED, NOPASS:: dPsi
PROCEDURE(partialDer_interface), DEFERRED, PASS:: partialDer
END TYPE meshVol1D
ABSTRACT INTERFACE
PURE FUNCTION fPsi_interface(xi) RESULT(fPsi)
REAL(8), INTENT(in):: xi(1:3)
REAL(8), ALLOCATABLE:: fPsi(:)
END FUNCTION fPsi_interface
PURE FUNCTION dPsi_interface(xi) RESULT(dPsi)
REAL(8), INTENT(in):: xi(1:3)
REAL(8), ALLOCATABLE:: dPsi(:,:)
END FUNCTION dPsi_interface
PURE SUBROUTINE partialDer_interface(self, dPsi, dx)
IMPORT meshVol1D
CLASS(meshVol1D), INTENT(in):: self
REAL(8), INTENT(in):: dPsi(1:,1:)
REAL(8), INTENT(out), DIMENSION(1):: dx
END SUBROUTINE partialDer_interface
END INTERFACE
TYPE, PUBLIC, EXTENDS(meshVol1D):: meshVol1DSegm
!Element coordinates
REAL(8):: x(1:2)
!Connectivity to nodes
CLASS(meshNode), POINTER:: n1 => NULL(), n2 => NULL()
!Connectivity to adjacent elements
CLASS(*), POINTER:: e1 => NULL(), e2 => NULL()
REAL(8):: arNodes(1:2)
CONTAINS
PROCEDURE, PASS:: init => initVol1DSegm
PROCEDURE, PASS:: area => areaSegm
PROCEDURE, NOPASS:: fPsi => fPsiSegm
PROCEDURE, NOPASS:: dPsi => dPsiSegm
PROCEDURE, PASS:: partialDer => partialDerSegm
PROCEDURE, PASS:: elemK => elemKSegm
PROCEDURE, PASS:: elemF => elemFSegm
PROCEDURE, NOPASS:: weight => weightSegm
PROCEDURE, NOPASS:: inside => insideSegm
PROCEDURE, PASS:: scatter => scatterSegm
PROCEDURE, PASS:: gatherEF => gatherEFSegm
PROCEDURE, PASS:: getNodes => getNodesSegm
PROCEDURE, PASS:: phy2log => phy2logSegm
PROCEDURE, PASS:: nextElement => nextElementSegm
PROCEDURE, PASS:: resetOutput => resetOutputSegm
END TYPE meshVol1DSegm
CONTAINS
!NODE FUNCTIONS
!Init node element
SUBROUTINE initNode1D(self, n, r)
USE moduleSpecies
USE moduleRefParam
IMPLICIT NONE
CLASS(meshNode1D), INTENT(out):: self
INTEGER, INTENT(in):: n
REAL(8), INTENT(in):: r(1:3)
self%n = n
self%x = r(1)/L_ref
!Node volume, to be determined in mesh
self%v = 0.D0
!Allocates output
ALLOCATE(self%output(1:nSpecies))
END SUBROUTINE initNode1D
FUNCTION getCoord1D(self) RESULT(r)
IMPLICIT NONE
CLASS(meshNode1D):: self
REAL(8):: r(1:3)
r = (/ self%x, 0.D0, 0.D0 /)
END FUNCTION getCoord1D
!EDGE FUNCTIONS
!Inits edge element
SUBROUTINE initEdge1D(self, n, p, bt, physicalSurface)
IMPLICIT NONE
CLASS(meshEdge1D), INTENT(out):: self
INTEGER, INTENT(in):: n
INTEGER, INTENT(in):: p(:)
INTEGER, INTENT(in):: bt
INTEGER, INTENT(in):: physicalSurface
REAL(8), DIMENSION(1:3):: r1
self%n = n
self%n1 => mesh%nodes(p(1))%obj
!Get element coordinates
r1 = self%n1%getCoordinates()
self%x = r1(1)
self%normal = (/ 1.D0, 0.D0, 0.D0 /)
!Boundary index
self%bt = bt
!Physical Surface
self%physicalSurface = physicalSurface
END SUBROUTINE initEdge1D
!Get nodes from edge
PURE FUNCTION getNodes1D(self) RESULT(n)
IMPLICIT NONE
CLASS(meshEdge1D), INTENT(in):: self
INTEGER, ALLOCATABLE:: n(:)
ALLOCATE(n(1))
n = (/ self%n1%n /)
END FUNCTION getNodes1D
!Calculates a 'random' position in edge
FUNCTION randPos1D(self) RESULT(r)
CLASS(meshEdge1D), INTENT(in):: self
REAL(8):: r(1:3)
r = (/ self%x, 0.D0, 0.D0 /)
END FUNCTION randPos1D
!VOLUME FUNCTIONS
!SEGMENT FUNCTIONS
!Init segment element
SUBROUTINE initVol1DSegm(self, n, p)
USE moduleRefParam
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(out):: self
INTEGER, INTENT(in):: n
INTEGER, INTENT(in):: p(:)
REAL(8), DIMENSION(1:3):: r1, r2
self%n = n
self%n1 => mesh%nodes(p(1))%obj
self%n2 => mesh%nodes(p(2))%obj
!Get element coordinates
r1 = self%n1%getCoordinates()
r2 = self%n2%getCoordinates()
self%x = (/ r1(1), r2(1) /)
!Assign node volume
CALL self%area()
self%n1%v = self%n1%v + self%arNodes(1)
self%n2%v = self%n2%v + self%arNodes(2)
self%sigmaVrelMax = sigma_ref/L_ref**2
CALL OMP_INIT_LOCK(self%lock)
END SUBROUTINE initVol1DSegm
!Computes element area
PURE SUBROUTINE areaSegm(self)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(inout):: self
REAL(8):: l !element length
REAL(8):: fPsi(1:2)
REAL(8):: detJ
REAL(8):: Xii(1:3)
self%volume = 0.D0
self%arNodes = 0.D0
!1 point Gauss integral
Xii = 0.D0
fPsi = self%fPsi(Xii)
detJ = self%detJac(Xii)
l = 2.D0*detJ
self%volume = l
self%arNodes = fPsi*l
END SUBROUTINE areaSegm
!Computes element functions at point xii
PURE FUNCTION fPsiSegm(xi) RESULT(fPsi)
IMPLICIT NONE
REAL(8), INTENT(in):: xi(1:3)
REAL(8), ALLOCATABLE:: fPsi(:)
ALLOCATE(fPsi(1:2))
fPsi(1) = 1.D0 - xi(1)
fPsi(2) = 1.D0 + xi(1)
fPsi = fPsi * 5.D-1
END FUNCTION fPsiSegm
!Computes element derivative shape function at Xii
PURE FUNCTION dPsiSegm(xi) RESULT(dPsi)
IMPLICIT NONE
REAL(8), INTENT(in):: xi(1:3)
REAL(8), ALLOCATABLE:: dPsi(:,:)
ALLOCATE(dPsi(1:1, 1:2))
dPsi(1, 1) = -5.D-1
dPsi(1, 2) = 5.D-1
END FUNCTION dPsiSegm
!Computes partial derivatives of coordinates
PURE SUBROUTINE partialDerSegm(self, dPsi, dx)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
REAL(8), INTENT(in):: dPsi(1:,1:)
REAL(8), INTENT(out), DIMENSION(1):: dx
dx(1) = DOT_PRODUCT(dPsi(1,:), self%x)
END SUBROUTINE partialDerSegm
!Computes local stiffness matrix
PURE FUNCTION elemKSegm(self) RESULT(ke)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
REAL(8):: ke(1:2,1:2)
REAL(8):: Xii(1:3)
REAL(8):: dPsi(1:1, 1:2)
REAL(8):: invJ
ke = 0.D0
Xii = (/ 0.D0, 0.D0, 0.D0 /)
dPsi = self%dPsi(Xii)
invJ = self%invJac(Xii, dPsi)
ke(1,:) = (/ dPsi(1,1)*dPsi(1,1), dPsi(1,1)*dPsi(1,2) /)
ke(2,:) = (/ dPsi(1,2)*dPsi(1,1), dPsi(1,2)*dPsi(1,2) /)
ke = 2.D0*ke*invJ
END FUNCTION elemKSegm
PURE FUNCTION elemFSegm(self, source) RESULT(localF)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
REAL(8), INTENT(in):: source(1:)
REAL(8), ALLOCATABLE:: localF(:)
REAL(8):: fPsi(1:2)
REAL(8):: detJ
REAL(8):: Xii(1:3)
Xii = 0.D0
fPsi = self%fPsi(Xii)
detJ = self%detJac(Xii)
ALLOCATE(localF(1:2))
localF = 2.D0*DOT_PRODUCT(fPsi, source)*detJ
END FUNCTION elemFSegm
PURE FUNCTION weightSegm(xi) RESULT(w)
IMPLICIT NONE
REAL(8), INTENT(in):: xi(1:3)
REAL(8):: w(1:3)
w = fPsiSegm(xi)
END FUNCTION weightSegm
PURE FUNCTION insideSegm(xi) RESULT(ins)
IMPLICIT NONE
REAL(8), INTENT(in):: xi(1:3)
LOGICAL:: ins
ins = xi(1) >=-1.D0 .AND. &
xi(1) <= 1.D0
END FUNCTION insideSegm
SUBROUTINE scatterSegm(self, part)
USE moduleOutput
USE moduleSpecies
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
CLASS(particle), INTENT(in):: part
TYPE(outputNode), POINTER:: vertex
REAL(8):: w_p(1:2)
REAL(8):: tensorS(1:3,1:3)
w_p = self%weight(part%xi)
tensorS = outerProduct(part%v, part%v)
vertex => self%n1%output(part%sp)
vertex%den = vertex%den + part%weight*w_p(1)
vertex%mom(:) = vertex%mom(:) + part%weight*w_p(1)*part%v(:)
vertex%tensorS(:,:) = vertex%tensorS(:,:) + part%weight*w_p(1)*tensorS
vertex => self%n2%output(part%sp)
vertex%den = vertex%den + part%weight*w_p(2)
vertex%mom(:) = vertex%mom(:) + part%weight*w_p(2)*part%v(:)
vertex%tensorS(:,:) = vertex%tensorS(:,:) + part%weight*w_p(2)*tensorS
END SUBROUTINE scatterSegm
!Gathers EF at position Xii
PURE FUNCTION gatherEFSegm(self, xi) RESULT(EF)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
REAL(8), INTENT(in):: xi(1:3)
REAL(8):: dPsi(1, 1:2)
REAL(8):: phi(1:2)
REAL(8):: EF(1:3)
REAL(8):: invJ
phi = (/ self%n1%emData%phi, &
self%n2%emData%phi /)
dPsi = self%dPsi(xi)
invJ = self%invJac(xi, dPsi)
EF(1) = -DOT_PRODUCT(dPsi(1, :), phi)*invJ
EF(2) = 0.D0
EF(3) = 0.D0
END FUNCTION gatherEFSegm
!Get nodes from segment
PURE FUNCTION getNodesSegm(self) RESULT(n)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
INTEGER, ALLOCATABLE:: n(:)
ALLOCATE(n(1:2))
n = (/ self%n1%n, self%n2%n /)
END FUNCTION getNodesSegm
PURE FUNCTION phy2logSegm(self, r) RESULT(xN)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
REAL(8), INTENT(in):: r(1:3)
REAL(8):: xN(1:3)
xN = 0.D0
xN(1) = 2.D0*(r(1) - self%x(1))/(self%x(2) - self%x(1)) - 1.D0
END FUNCTION phy2logSegm
!Get next element for a logical position xi
SUBROUTINE nextElementSegm(self, xi, nextElement)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(in):: self
REAL(8), INTENT(in):: xi(1:3)
CLASS(*), POINTER, INTENT(out):: nextElement
NULLIFY(nextElement)
IF (xi(1) < -1.D0) THEN
nextElement => self%e2
ELSEIF (xi(1) > 1.D0) THEN
nextElement => self%e1
END IF
END SUBROUTINE nextElementSegm
!Reset the output of nodes in element
PURE SUBROUTINE resetOutputSegm(self)
USE moduleSpecies
USE moduleOutput
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(inout):: self
INTEGER:: k
DO k = 1, nSpecies
self%n1%output(k)%den = 0.D0
self%n1%output(k)%mom = 0.D0
self%n1%output(k)%tensorS = 0.D0
self%n2%output(k)%den = 0.D0
self%n2%output(k)%mom = 0.D0
self%n2%output(k)%tensorS = 0.D0
END DO
END SUBROUTINE resetOutputSegm
!COMMON FUNCTIONS FOR 1D VOLUME ELEMENTS
!Computes the element Jacobian determinant
PURE FUNCTION detJ1D(self, xi, dPsi_in) RESULT(dJ)
IMPLICIT NONE
CLASS(meshVol1D), INTENT(in):: self
REAL(8), INTENT(in):: xi(1:3)
REAL(8), INTENT(in), OPTIONAL:: dPsi_in(1:,1:)
REAL(8), ALLOCATABLE:: dPsi(:,:)
REAL(8):: dJ
REAL(8):: dx(1)
IF (PRESENT(dPsi_in)) THEN
dPsi = dPsi_in
ELSE
dPsi = self%dPsi(xi)
END IF
CALL self%partialDer(dPsi, dx)
dJ = dx(1)
END FUNCTION detJ1D
!Computes the invers Jacobian
PURE FUNCTION invJ1D(self, xi, dPsi_in) RESULT(invJ)
IMPLICIT NONE
CLASS(meshVol1D), INTENT(in):: self
REAL(8), INTENT(in):: xi(1:3)
REAL(8), INTENT(in), OPTIONAL:: dPsi_in(1:,1:)
REAL(8), ALLOCATABLE:: dPsi(:,:)
REAL(8):: dx(1)
REAL(8):: invJ
IF (PRESENT(dPsi_in)) THEN
dPsi = dPsi_in
ELSE
dPsi = self%dPsi(xi)
END IF
CALL self%partialDer(dPsi, dx)
invJ = 1.D0/dx(1)
END FUNCTION invJ1D
END MODULE moduleMesh1D

View file

@ -0,0 +1,40 @@
MODULE moduleMesh1DBoundary
USE moduleMesh1D
TYPE, PUBLIC, EXTENDS(meshEdge1D):: meshEdge1DRef
CONTAINS
PROCEDURE, PASS:: fBoundary => reflection
END TYPE meshEdge1DRef
TYPE, PUBLIC, EXTENDS(meshEdge1D):: meshEdge1DAbs
CONTAINS
PROCEDURE, PASS:: fBoundary => absorption
END TYPE meshEdge1DAbs
CONTAINS
SUBROUTINE reflection(self, part)
USE moduleSpecies
IMPLICIT NONE
CLASS(meshEdge1DRef), INTENT(inout):: self
CLASS(particle), INTENT(inout):: part
part%v(1) = -part%v(1)
part%r(1) = 2.D0*self%x - part%r(1)
END SUBROUTINE reflection
SUBROUTINE absorption(self, part)
USE moduleSpecies
IMPLICIT NONE
CLASS(meshEdge1DAbs), INTENT(inout):: self
CLASS(particle), INTENT(inout):: part
part%n_in = .FALSE.
END SUBROUTINE absorption
END MODULE moduleMesh1DBoundary

View file

@ -0,0 +1,243 @@
MODULE moduleMesh1DRead
USE moduleMesh
USE moduleMesh1D
USE moduleMesh1DBoundary
TYPE, EXTENDS(meshGeneric):: mesh1DGeneric
CONTAINS
PROCEDURE, PASS:: readMesh => readMesh1D
END TYPE
INTERFACE connected
MODULE PROCEDURE connectedVolVol, connectedVolEdge
END INTERFACE connected
CONTAINS
SUBROUTINE readMesh1D(self, filename)
USE moduleBoundary
IMPLICIT NONE
CLASS(mesh1DGeneric), INTENT(out):: self
CHARACTER(:), ALLOCATABLE, INTENT(in):: filename
REAL(8):: x
INTEGER:: p(1:2)
INTEGER:: e, et, n, eTemp, elemType, bt
INTEGER:: totalNumElem
INTEGER:: boundaryType
!Open file mesh
OPEN(10, FILE=TRIM(filename))
!Skip header
READ(10, *)
READ(10, *)
READ(10, *)
READ(10, *)
!Read number of nodes
READ(10, *) self%numNodes
!Allocate required matrices and vectors
ALLOCATE(self%nodes(1:self%numNodes))
ALLOCATE(self%K(1:self%numNodes, 1:self%numNodes))
ALLOCATE(self%IPIV(1:self%numNodes, 1:self%numNodes))
self%K = 0.D0
self%IPIV = 0
!Read nodes coordinates. Only relevant for x
DO e = 1, self%numNodes
READ(10, *) n, x
ALLOCATE(meshNode1D:: self%nodes(n)%obj)
CALL self%nodes(n)%obj%init(n, (/ x, 0.D0, 0.D0 /))
END DO
!Skips comments
READ(10, *)
READ(10, *)
!Reads the total number of elements (edges+vol)
READ(10, *) totalNumElem
self%numEdges = 0
DO e = 1, totalNumElem
READ(10, *) eTemp, elemType
IF (elemType == 15) THEN !15 is physical node in GMSH
self%numEdges = e
END IF
END DO
!Substract the number of edges to the total number of elements
!to obtain the number of volume elements
self%numVols = totalNumelem - self%numEdges
!Allocates arrays
ALLOCATE(self%edges(1:self%numEdges))
ALLOCATE(self%vols(1:self%numVols))
!Go back to the beginning of reading elements
DO e = 1, totalNumelem
BACKSPACE(10)
END DO
!Reads edges
DO e = 1, self%numEdges
READ(10, *) n, elemType, eTemp, boundaryType, eTemp, p(1)
!Associate boundary condition
bt = getBoundaryId(boundaryType)
SELECT CASE(boundary(bt)%obj%boundaryType)
CASE ('reflection')
ALLOCATE(meshEdge1DRef:: self%edges(e)%obj)
CASE ('absorption')
ALLOCATE(meshEdge1DAbs:: self%edges(e)%obj)
END SELECT
CALL self%edges(e)%obj%init(n, p(1:1), bt, boundaryType)
END DO
!Read and initialize volumes
DO e = 1, self%numVols
READ(10, *) n, elemType, eTemp, eTemp, eTemp, p(1:2)
ALLOCATE(meshVol1DSegm:: self%vols(e)%obj)
CALL self%vols(e)%obj%init(n - self%numEdges, p(1:2))
END DO
CLOSE(10)
!Build connectivity between elements
DO e = 1, self%numVols
!Connectivity between volumes
DO et = 1, self%numVols
IF (e /= et) THEN
CALL connected(self%vols(e)%obj, self%vols(et)%obj)
END IF
END DO
!Connectivity betwen vols and edges
DO et = 1, self%numEdges
CALL connected(self%vols(e)%obj, self%edges(et)%obj)
END DO
!Constructs the global K matrix
CALL constructGlobalK(self%K, self%vols(e)%obj)
END DO
END SUBROUTINE readMesh1D
SUBROUTINE connectedVolVol(elemA, elemB)
IMPLICIT NONE
CLASS(meshVol), INTENT(inout):: elemA
CLASS(meshVol), INTENT(inout):: elemB
SELECT TYPE(elemA)
TYPE IS(meshVol1DSegm)
SELECT TYPE(elemB)
TYPE IS(meshVol1DSegm)
CALL connectedSegmSegm(elemA, elemB)
END SELECT
END SELECT
END SUBROUTINE connectedVolVol
SUBROUTINE connectedSegmSegm(elemA, elemB)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(inout), TARGET:: elemA
CLASS(meshVol1DSegm), INTENT(inout), TARGET:: elemB
IF (.NOT. ASSOCIATED(elemA%e1) .AND. &
elemA%n2%n == elemB%n1%n) THEN
elemA%e1 => elemB
elemB%e2 => elemA
END IF
IF (.NOT. ASSOCIATED(elemA%e2) .AND. &
elemA%n1%n == elemB%n2%n) THEN
elemA%e2 => elemB
elemB%e1 => elemA
END IF
END SUBROUTINE connectedSegmSegm
SUBROUTINE connectedVolEdge(elemA, elemB)
IMPLICIT NONE
CLASS(meshVol), INTENT(inout):: elemA
CLASS(meshEdge), INTENT(inout):: elemB
SELECT TYPE(elemA)
TYPE IS (meshVol1DSegm)
SELECT TYPE(elemB)
CLASS IS(meshEdge1D)
CALL connectedSegmEdge(elemA, elemB)
END SELECT
END SELECT
END SUBROUTINE connectedVolEdge
SUBROUTINE connectedSegmEdge(elemA, elemB)
IMPLICIT NONE
CLASS(meshVol1DSegm), INTENT(inout), TARGET:: elemA
CLASS(meshEdge1D), INTENT(inout), TARGET:: elemB
IF (.NOT. ASSOCIATED(elemA%e1) .AND. &
elemA%n2%n == elemB%n1%n) THEN
elemA%e1 => elemB
elemB%e2 => elemA
END IF
IF (.NOT. ASSOCIATED(elemA%e2) .AND. &
elemA%n1%n == elemB%n1%n) THEN
elemA%e2 => elemB
elemB%e1 => elemA
END IF
END SUBROUTINE connectedSegmEdge
SUBROUTINE constructGlobalK(K, elem)
IMPLICIT NONE
REAL(8), INTENT(inout):: K(1:,1:)
CLASS(meshVol), INTENT(in):: elem
REAL(8):: localK(1:2,1:2)
INTEGER:: i, j
INTEGER:: n(1:2)
SELECT TYPE(elem)
TYPE IS(meshVol1DSegm)
localK = elem%elemK()
n = (/ elem%n1%n, elem%n2%n /)
CLASS DEFAULT
n = 0
localK = 0.D0
END SELECT
DO i = 1, 2
DO j = 1, 2
K(n(i), n(j)) = K(n(i), n(j)) + localK(i, j)
END DO
END DO
END SUBROUTINE constructGlobalK
END MODULE moduleMesh1DRead

View file

@ -37,8 +37,6 @@ MODULE moduleMeshCyl
TYPE, PUBLIC, ABSTRACT, EXTENDS(meshVol):: meshVolCyl TYPE, PUBLIC, ABSTRACT, EXTENDS(meshVol):: meshVolCyl
CONTAINS CONTAINS
PROCEDURE, PASS:: collision => collision2DCyl
PROCEDURE, PASS:: findCell => findCellCyl
PROCEDURE, PASS:: detJac => detJCyl PROCEDURE, PASS:: detJac => detJCyl
PROCEDURE, PASS:: invJac => invJCyl PROCEDURE, PASS:: invJac => invJCyl
PROCEDURE(fPsi_interface), DEFERRED, NOPASS:: fPsi PROCEDURE(fPsi_interface), DEFERRED, NOPASS:: fPsi
@ -176,7 +174,7 @@ MODULE moduleMeshCyl
INTEGER, INTENT(in):: p(:) INTEGER, INTENT(in):: p(:)
INTEGER, INTENT(in):: bt INTEGER, INTENT(in):: bt
INTEGER, INTENT(in):: physicalSurface INTEGER, INTENT(in):: physicalSurface
REAL(8):: r1(1:3), r2(1:3) REAL(8), DIMENSION(1:3):: r1, r2
self%n = n self%n = n
self%n1 => mesh%nodes(p(1))%obj self%n1 => mesh%nodes(p(1))%obj
@ -581,7 +579,7 @@ MODULE moduleMeshCyl
END SUBROUTINE nextElementQuad END SUBROUTINE nextElementQuad
!Reset the output of nodes in tria element !Reset the output of nodes in quad element
PURE SUBROUTINE resetOutputQuad(self) PURE SUBROUTINE resetOutputQuad(self)
USE moduleSpecies USE moduleSpecies
USE moduleOutput USE moduleOutput
@ -1021,122 +1019,4 @@ MODULE moduleMeshCyl
END FUNCTION invJCyl END FUNCTION invJCyl
!Find next cell for particle
RECURSIVE SUBROUTINE findCellCyl(self, part, oldCell)
USE moduleSpecies
USE OMP_LIB
IMPLICIT NONE
CLASS(meshVolCyl), INTENT(inout):: self
CLASS(meshVol), OPTIONAL, INTENT(in):: oldCell
CLASS(particle), INTENT(inout), TARGET:: part
REAL(8):: xi(1:3)
CLASS(*), POINTER:: nextElement
xi = self%phy2log(part%r)
!Checks if particle is inside 'self' cell
IF (self%inside(xi)) THEN
part%vol = self%n
part%xi = xi
part%n_in = .TRUE.
!Assign particle to listPart_in
CALL OMP_SET_LOCK(self%lock)
CALL self%listPart_in%add(part)
self%totalWeight = self%totalWeight + part%weight
CALL OMP_UNSET_LOCK(self%lock)
ELSE
!If not, searches for a neighbour and repeats the process.
CALL self%nextElement(xi, nextElement)
!Defines the next step
SELECT TYPE(nextElement)
CLASS IS(meshVolCyl)
!Particle moved to new cell, repeat find procedure
CALL nextElement%findCell(part, self)
CLASS IS (meshEdgeCyl)
!Particle encountered an edge, execute boundary
CALL nextElement%fBoundary(part)
!If particle is still inside the domain, call findCell
IF (part%n_in) THEN
IF(PRESENT(oldCell)) THEN
CALL self%findCell(part, oldCell)
ELSE
CALL self%findCell(part)
END IF
END IF
CLASS DEFAULT
WRITE(*,*) "ERROR, CHECK findCellCylQuad"
END SELECT
END IF
END SUBROUTINE findCellCyl
!Computes collisions in element
SUBROUTINE collision2DCyl(self)
USE moduleCollisions
USE moduleSpecies
USE moduleList
use moduleRefParam
IMPLICIT NONE
CLASS(meshVolCyl), INTENT(inout):: self
INTEGER:: nPart !Number of particles inside the cell
REAL(8):: pMax !Maximum probability of collision
INTEGER:: rnd !random index
TYPE(particle), POINTER:: part_i, part_j
INTEGER:: n !collision
INTEGER:: ij, k
REAL(8):: sigmaVrelMaxNew
TYPE(pointerArray), ALLOCATABLE:: partTemp(:)
self%nColl = 0
nPart = self%listPart_in%amount
IF (nPart > 1) THEN
pMax = self%totalWeight*self%sigmaVrelMax*tauMin/self%volume
self%nColl = INT(REAL(nPart)*pMax*0.5D0)
!Converts the list of particles to an array for easy access
IF (self%nColl > 0) THEN
partTemp = self%listPart_in%convert2Array()
END IF
DO n = 1, self%nColl
!Select random numbers
rnd = 1 + FLOOR(nPart*RAND())
part_i => partTemp(rnd)%part
rnd = 1 + FLOOR(nPart*RAND())
part_j => partTemp(rnd)%part
ij = interactionIndex(part_i%sp, part_j%sp)
sigmaVrelMaxNew = 0.D0
DO k = 1, interactionMatrix(ij)%amount
CALL interactionMatrix(ij)%collisions(k)%obj%collide(self%sigmaVrelMax, sigmaVrelMaxNew, part_i, part_j)
END DO
!Update maximum cross section*v_rel per each collision
IF (sigmaVrelMaxNew > self%sigmaVrelMax) THEN
self%sigmaVrelMax = sigmaVrelMaxNew
END IF
END DO
END IF
self%totalWeight = 0.D0
!Reset output in nodes
CALL self%resetOutput()
!Erase the list of particles inside the cell
CALL self%listPart_in%erase()
END SUBROUTINE collision2DCyl
END MODULE moduleMeshCyl END MODULE moduleMeshCyl

View file

@ -6,9 +6,6 @@ MODULE moduleMeshCylRead
TYPE, EXTENDS(meshGeneric):: meshCylGeneric TYPE, EXTENDS(meshGeneric):: meshCylGeneric
CONTAINS CONTAINS
PROCEDURE, PASS:: readMesh => readMeshCyl PROCEDURE, PASS:: readMesh => readMeshCyl
PROCEDURE, PASS:: printOutput => printOutputCyl
PROCEDURE, PASS:: printColl => printCollisionsCyl
PROCEDURE, PASS:: printEM => printEMCyl
END TYPE END TYPE
@ -19,7 +16,6 @@ MODULE moduleMeshCylRead
CONTAINS CONTAINS
SUBROUTINE readMeshCyl(self, filename) SUBROUTINE readMeshCyl(self, filename)
USE moduleRefParam
USE moduleBoundary USE moduleBoundary
IMPLICIT NONE IMPLICIT NONE
@ -82,7 +78,6 @@ MODULE moduleMeshCylRead
DO e=1, self%numEdges DO e=1, self%numEdges
READ(10,*) n, elemType, eTemp, boundaryType, eTemp, p(1:2) READ(10,*) n, elemType, eTemp, boundaryType, eTemp, p(1:2)
!Associate boundary condition procedure. !Associate boundary condition procedure.
!TODO: move to subroutine
bt = getBoundaryId(boundaryType) bt = getBoundaryId(boundaryType)
SELECT CASE(boundary(bt)%obj%boundaryType) SELECT CASE(boundary(bt)%obj%boundaryType)
CASE ('reflection') CASE ('reflection')
@ -120,7 +115,6 @@ MODULE moduleMeshCylRead
END SELECT END SELECT
END DO END DO
CLOSE(10) CLOSE(10)
@ -128,12 +122,12 @@ MODULE moduleMeshCylRead
!Build connectivity between elements !Build connectivity between elements
DO e = 1, self%numVols DO e = 1, self%numVols
!Connectivity between volumes !Connectivity between volumes
IF (e /= et) THEN
DO et = 1, self%numVols DO et = 1, self%numVols
IF (e /= et) THEN
CALL connected(self%vols(e)%obj, self%vols(et)%obj) CALL connected(self%vols(e)%obj, self%vols(et)%obj)
END DO
END IF END IF
END DO
!Connectivity between vols and edges !Connectivity between vols and edges
DO et = 1, self%numEdges DO et = 1, self%numEdges
@ -588,194 +582,4 @@ MODULE moduleMeshCylRead
END SUBROUTINE constructGlobalK END SUBROUTINE constructGlobalK
SUBROUTINE printOutputCyl(self, t)
USE moduleRefParam
USE moduleSpecies
USE moduleOutput
IMPLICIT NONE
CLASS(meshCylGeneric), INTENT(in):: self
INTEGER, INTENT(in):: t
INTEGER:: n, i
TYPE(outputFormat):: output(1:self%numNodes)
REAL(8):: time
CHARACTER(:), ALLOCATABLE:: fileName
CHARACTER (LEN=6):: tstring !TODO: Review to allow any number of iterations
time = DBLE(t)*tauMin*ti_ref
DO i = 1, nSpecies
WRITE(tstring, '(I6.6)') t
fileName='OUTPUT_' // tstring// '_' // species(i)%obj%name // '.msh'
WRITE(*, "(6X,A15,A)") "Creating file: ", fileName
OPEN (60, file = path // folder // '/' // fileName)
WRITE(60, "(A)") '$MeshFormat'
WRITE(60, "(A)") '2.2 0 8'
WRITE(60, "(A)") '$EndMeshFormat'
WRITE(60, "(A)") '$NodeData'
WRITE(60, "(A)") '1'
WRITE(60, "(A)") '"Density (m^-3)"'
WRITE(60, *) 1
WRITE(60, *) time
WRITE(60, *) 3
WRITE(60, *) t
WRITE(60, *) 1
WRITE(60, *) self%numNodes
DO n=1, self%numNodes
CALL calculateOutput(self%nodes(n)%obj%output(i), output(n), self%nodes(n)%obj%v, species(i)%obj)
WRITE(60, "(I6,ES20.6E3)") n, output(n)%density
END DO
WRITE(60, "(A)") '$EndNodeData'
WRITE(60, "(A)") '$NodeData'
WRITE(60, "(A)") '1'
WRITE(60, "(A)") '"Velocity (m/s)"'
WRITE(60, *) 1
WRITE(60, *) time
WRITE(60, *) 3
WRITE(60, *) t
WRITE(60, *) 3
WRITE(60, *) self%numNodes
DO n=1, self%numNodes
WRITE(60, "(I6,3(ES20.6E3))") n, output(n)%velocity
END DO
WRITE(60, "(A)") '$EndNodeData'
WRITE(60, "(A)") '$NodeData'
WRITE(60, "(A)") '1'
WRITE(60, "(A)") '"Pressure (Pa)"'
WRITE(60, *) 1
WRITE(60, *) time
WRITE(60, *) 3
WRITE(60, *) t
WRITE(60, *) 1
WRITE(60, *) self%numNodes
DO n=1, self%numNodes
WRITE(60, "(I6,3(ES20.6E3))") n, output(n)%pressure
END DO
WRITE(60, "(A)") '$EndNodeData'
WRITE(60, "(A)") '$NodeData'
WRITE(60, "(A)") '1'
WRITE(60, "(A)") '"Temperature (K)"'
WRITE(60, *) 1
WRITE(60, *) time
WRITE(60, *) 3
WRITE(60, *) t
WRITE(60, *) 1
WRITE(60, *) self%numNodes
DO n=1, self%numNodes
WRITE(60, "(I6,3(ES20.6E3))") n, output(n)%temperature
END DO
WRITE(60, "(A)") '$EndNodeData'
CLOSE (60)
END DO
END SUBROUTINE printOutputCyl
SUBROUTINE printCollisionsCyl(self, t)
USE moduleRefParam
USE moduleCaseParam
USE moduleOutput
IMPLICIT NONE
CLASS(meshCylGeneric), INTENT(in):: self
INTEGER, INTENT(in):: t
INTEGER:: n
REAL(8):: time
CHARACTER(:), ALLOCATABLE:: fileName
CHARACTER (LEN=6):: tstring !TODO: Review to allow any number of iterations
IF (collOutput) THEN
time = DBLE(t)*tauMin*ti_ref
WRITE(tstring, '(I6.6)') t
fileName='OUTPUT_' // tstring// '_Collisions.msh'
WRITE(*, "(6X,A15,A)") "Creating file: ", fileName
OPEN (60, file = path // folder // '/' // fileName)
WRITE(60, "(A)") '$MeshFormat'
WRITE(60, "(A)") '2.2 0 8'
WRITE(60, "(A)") '$EndMeshFormat'
WRITE(60, "(A)") '$ElementData'
WRITE(60, "(A)") '1'
WRITE(60, "(A)") '"Collisions"'
WRITE(60, *) 1
WRITE(60, *) time
WRITE(60, *) 3
WRITE(60, *) t
WRITE(60, *) 1
WRITE(60, *) self%numVols
DO n=1, self%numVols
WRITE(60, "(I6,I10)") n + self%numEdges, self%vols(n)%obj%nColl
END DO
WRITE(60, "(A)") '$EndElementData'
CLOSE(60)
END IF
END SUBROUTINE printCollisionsCyl
SUBROUTINE printEMCyl(self, t)
USE moduleRefParam
USE moduleCaseParam
USE moduleOutput
IMPLICIT NONE
CLASS(meshCylGeneric), INTENT(in):: self
INTEGER, INTENT(in):: t
INTEGER:: n, e
REAL(8):: time
CHARACTER(:), ALLOCATABLE:: fileName
CHARACTER (LEN=6):: tstring !TODO: Review to allow any number of iterations
REAL(8):: xi(1:3)
IF (emOutput) THEN
time = DBLE(t)*tauMin*ti_ref
WRITE(tstring, '(I6.6)') t
fileName='OUTPUT_' // tstring// '_EMField.msh'
WRITE(*, "(6X,A15,A)") "Creating file: ", fileName
OPEN (20, file = path // folder // '/' // fileName)
WRITE(20, "(A)") '$MeshFormat'
WRITE(20, "(A)") '2.2 0 8'
WRITE(20, "(A)") '$EndMeshFormat'
WRITE(20, "(A)") '$NodeData'
WRITE(20, "(A)") '1'
WRITE(20, "(A)") '"Potential (V)"'
WRITE(20, *) 1
WRITE(20, *) time
WRITE(20, *) 3
WRITE(20, *) t
WRITE(20, *) 1
WRITE(20, *) self%numNodes
DO n=1, self%numNodes
WRITE(20, *) n, self%nodes(n)%obj%emData%phi*Volt_ref
END DO
WRITE(20, "(A)") '$EndNodeData'
WRITE(20, "(A)") '$ElementData'
WRITE(20, "(A)") '1'
WRITE(20, "(A)") '"Electric Field (V/m)"'
WRITE(20, *) 1
WRITE(20, *) time
WRITE(20, *) 3
WRITE(20, *) t
WRITE(20, *) 3
WRITE(20, *) self%numVols
DO e=1, self%numVols
SELECT TYPE(elem=>self%vols(e)%obj)
TYPE IS(meshVolCylQuad)
xi = (/ 0.D0, 0.D0, 0.D0 /)
TYPE IS(meshVolCylTria)
xi = (/ 1.D0/3.D0, 1.D0/3.D0, 0.D0 /)
END SELECT
WRITE(20, *) e+self%numEdges, self%vols(e)%obj%gatherEF(xi)*EF_ref
END DO
WRITE(20, "(A)") '$EndElementData'
CLOSE(20)
END IF
END SUBROUTINE printEMCyl
END MODULE moduleMeshCylRead END MODULE moduleMeshCylRead

View file

@ -72,6 +72,9 @@ MODULE moduleSolver
CASE('2DCylCharged') CASE('2DCylCharged')
self%pushParticle => pushCylCharged self%pushParticle => pushCylCharged
CASE('1DCartCharged')
self%pushParticle => push1DCharged
CASE DEFAULT CASE DEFAULT
CALL criticalError('Solver ' // pusherType // ' not found','readCase') CALL criticalError('Solver ' // pusherType // ' not found','readCase')
@ -227,6 +230,33 @@ MODULE moduleSolver
END SUBROUTINE pushCylCharged END SUBROUTINE pushCylCharged
!Push charged particles in 1D cartesian coordinates
PURE SUBROUTINE push1DCharged(part)
USE moduleSPecies
USE moduleEM
IMPLICIT NONE
TYPE(particle), INTENT(inout):: part
TYPE(particle):: part_temp
REAL(8):: tauSp
REAL(8):: qmEFt(1:3)
part_temp = part
!Time step for particle species
tauSp = tau(part_temp%sp)
!Get the electric field at particle position
qmEFt = part_temp%qm*gatherElecField(part_temp)*tauSp
!x
part_temp%v(1) = part%v(1) + qmEFt(1)
part_temp%r(1) = part%r(1) + part_temp%v(1)*tauSp
part_temp%n_in = .FALSE.
part = part_temp
END SUBROUTINE push1DCharged
!Do the collisions in all the cells !Do the collisions in all the cells
SUBROUTINE doCollisions() SUBROUTINE doCollisions()
USE moduleMesh USE moduleMesh