Collisions and EM field in .vtu
The collisions and EM field information is now available in .vtu files. A collection file .pvd is provided per dataset for time-dependent plotting. Still to do: Write average quantities in .vtu Read mesh from .vtu
This commit is contained in:
parent
ceab516a5b
commit
f1c0c5755f
2 changed files with 233 additions and 61 deletions
|
|
@ -1,22 +1,44 @@
|
|||
MODULE moduleMeshOutputVTK
|
||||
|
||||
CHARACTER(LEN=6):: prefix = 'OUTPUT'
|
||||
|
||||
CONTAINS
|
||||
|
||||
SUBROUTINE writeFileHeader(self, fileID)
|
||||
PURE FUNCTION formatFileName(prefix, suffix, extension, t) RESULT(fileName)
|
||||
USE moduleOutput
|
||||
IMPLICIT NONE
|
||||
|
||||
CHARACTER(*), INTENT(in):: prefix, suffix, extension
|
||||
INTEGER, INTENT(in), OPTIONAL:: t
|
||||
CHARACTER (LEN=iterationDigits):: tString
|
||||
CHARACTER(:), ALLOCATABLE:: fileName
|
||||
|
||||
IF (PRESENT(t)) THEN
|
||||
WRITE(tString, iterationFormat) t
|
||||
fileName = prefix // '_' // tString // '_' // suffix // '.' // extension
|
||||
|
||||
ELSE
|
||||
fileName = prefix // '_' // suffix // '.' // extension
|
||||
|
||||
END IF
|
||||
|
||||
END FUNCTION formatFileName
|
||||
|
||||
SUBROUTINE writeHeader(nNodes, nCells, fileID)
|
||||
USE moduleMesh
|
||||
IMPLICIT NONE
|
||||
|
||||
CLASS(meshParticles), INTENT(in):: self
|
||||
INTEGER, INTENT(in):: nNodes, nCells
|
||||
INTEGER, INTENT(in):: fileID
|
||||
|
||||
WRITE(fileID,"(A)") '<?xml version="1.0"?>'
|
||||
WRITE(fileID,"(2X, A)") '<VTKFile type="UnstructuredGrid">'
|
||||
WRITE(fileID,"(4X, A,ES20.6E3,A)") '<UnstructuredGrid>'
|
||||
WRITE(fileID,"(6X, A, I10, A, I10, A)") '<Piece NumberOfPoints="', self%numNodes, '" NumberOfCells="', self%numCells, '">'
|
||||
WRITE(fileID,"(6X, A, I10, A, I10, A)") '<Piece NumberOfPoints="', nNodes, '" NumberOfCells="', nCells, '">'
|
||||
|
||||
END SUBROUTINE writeFileHeader
|
||||
END SUBROUTINE writeHeader
|
||||
|
||||
SUBROUTINE writeFileFooter(fileID)
|
||||
SUBROUTINE writeFooter(fileID)
|
||||
IMPLICIT NONE
|
||||
|
||||
INTEGER, INTENT(in):: fileID
|
||||
|
|
@ -25,7 +47,7 @@ MODULE moduleMeshOutputVTK
|
|||
WRITE(fileID,"(4X, A)") '</UnstructuredGrid>'
|
||||
WRITE(fileID,"(2X, A)") '</VTKFile>'
|
||||
|
||||
END SUBROUTINE writeFileFooter
|
||||
END SUBROUTINE writeFooter
|
||||
|
||||
FUNCTION getCellType(cell) RESULT(indexType)
|
||||
USE moduleMesh3DCart
|
||||
|
|
@ -74,12 +96,12 @@ MODULE moduleMeshOutputVTK
|
|||
|
||||
END FUNCTION getCellType
|
||||
|
||||
SUBROUTINE writeFileMesh(self, fileID)
|
||||
SUBROUTINE writeMesh(self, fileID)
|
||||
USE moduleMesh
|
||||
USE moduleRefParam
|
||||
IMPLICIT NONE
|
||||
|
||||
CLASS(meshParticles), INTENT(in):: self
|
||||
CLASS(meshGeneric), INTENT(in):: self
|
||||
INTEGER, INTENT(in):: fileID
|
||||
CHARACTER(LEN=25):: nodeFormat
|
||||
CHARACTER(LEN=25):: cellFormat
|
||||
|
|
@ -123,104 +145,252 @@ MODULE moduleMeshOutputVTK
|
|||
WRITE(fileID, "(10X, A)") '</DataArray>'
|
||||
WRITE(fileID, "(8X, A)") '</Cells>'
|
||||
|
||||
END SUBROUTINE writeFileMesh
|
||||
END SUBROUTINE writeMesh
|
||||
|
||||
SUBROUTINE writeNodeData(self, fileID, output)
|
||||
SUBROUTINE writeSpeciesOutput(self, fileID, speciesIndex)
|
||||
USE moduleMesh
|
||||
USE moduleOutput
|
||||
IMPLICIT NONE
|
||||
|
||||
CLASS(meshParticles), INTENT(in):: self
|
||||
INTEGER, INTENT(in):: fileID
|
||||
INTEGER, INTENT(in):: speciesIndex
|
||||
TYPE(outputFormat):: output(1:self%numNodes)
|
||||
CHARACTER(LEN=25):: nodeFormat
|
||||
INTEGER:: n
|
||||
|
||||
WRITE(fileID,"(A)") '<PointData>'
|
||||
WRITE(fileID,"(A)") '<DataArray type="Float64" Name="Density (m^-3)" NumberOfComponents="1">'
|
||||
DO n = 1, self%numNodes
|
||||
CALL calculateOutput(self%nodes(n)%obj%output(speciesIndex), output(n), self%nodes(n)%obj%v, species(speciesIndex)%obj)
|
||||
|
||||
END DO
|
||||
|
||||
WRITE(fileID,"(8X,A)") '<PointData>'
|
||||
WRITE(fileID,"(10X,A)") '<DataArray type="Float64" Name="Density (m^-3)" NumberOfComponents="1">'
|
||||
WRITE(nodeFormat, "(A,I10, A)") "(", self%numNodes, "(1(ES20.6E3)))"
|
||||
WRITE(fileID,nodeFormat) (output(n)%density, n = 1, self%numNodes)
|
||||
WRITE(fileID,"(A)") '</DataArray>'
|
||||
WRITE(fileID,"(A)") '<DataArray type="Float64" Name="Velocity (m s^-1)" NumberOfComponents="3">'
|
||||
WRITE(fileID,"(10X,A)") '</DataArray>'
|
||||
WRITE(fileID,"(10X,A)") '<DataArray type="Float64" Name="Velocity (m s^-1)" NumberOfComponents="3">'
|
||||
WRITE(nodeFormat, "(A,I10, A)") "(", self%numNodes, "(3(ES20.6E3)))"
|
||||
WRITE(fileID,nodeFormat) (output(n)%velocity(1:3), n = 1, self%numNodes)
|
||||
WRITE(fileID,"(A)") '</DataArray>'
|
||||
WRITE(fileID,"(A)") '<DataArray type="Float64" Name="Pressure (Pa)" NumberOfComponents="1">'
|
||||
WRITE(fileID,"(10X,A)") '</DataArray>'
|
||||
WRITE(fileID,"(10X,A)") '<DataArray type="Float64" Name="Pressure (Pa)" NumberOfComponents="1">'
|
||||
WRITE(nodeFormat, "(A,I10, A)") "(", self%numNodes, "(1(ES20.6E3)))"
|
||||
WRITE(fileID,nodeFormat) (output(n)%pressure, n = 1, self%numNodes)
|
||||
WRITE(fileID,"(A)") '</DataArray>'
|
||||
WRITE(fileID,"(A)") '<DataArray type="Float64" Name="Temperature (K)" NumberOfComponents="1">'
|
||||
WRITE(fileID,"(10X,A)") '</DataArray>'
|
||||
WRITE(fileID,"(10X,A)") '<DataArray type="Float64" Name="Temperature (K)" NumberOfComponents="1">'
|
||||
WRITE(nodeFormat, "(A,I10, A)") "(", self%numNodes, "(1(ES20.6E3)))"
|
||||
WRITE(fileID,nodeFormat) (output(n)%temperature, n = 1, self%numNodes)
|
||||
WRITE(fileID,"(A)") '</DataArray>'
|
||||
WRITE(fileID,"(A)") '</PointData>'
|
||||
WRITE(fileID,"(10X,A)") '</DataArray>'
|
||||
WRITE(fileID,"(8X,A)") '</PointData>'
|
||||
|
||||
END SUBROUTINE writeNodeData
|
||||
END SUBROUTINE writeSpeciesOutput
|
||||
|
||||
SUBROUTINE writeCollOutput(self,fileID)
|
||||
USE moduleMesh
|
||||
USE moduleCollisions
|
||||
IMPLICIT NONE
|
||||
|
||||
CLASS(meshGeneric), INTENT(in):: self
|
||||
INTEGER, INTENT(in):: fileID
|
||||
INTEGER:: k, c, n
|
||||
CHARACTER(:), ALLOCATABLE:: title
|
||||
CHARACTER (LEN=2):: cString
|
||||
CHARACTER(LEN=25):: cellFormat
|
||||
|
||||
WRITE(fileID,"(8X,A)") '<CellData>'
|
||||
DO k = 1, nCollPairs
|
||||
DO c = 1, interactionMatrix(k)%amount
|
||||
WRITE(cString, "(I2)") c
|
||||
title = 'Pair ' // interactionMatrix(k)%sp_i%name // '-' // interactionMatrix(k)%sp_j%name // ' collision ' // cString
|
||||
WRITE(fileID,"(10X,A, A, A)") '<DataArray type="Float64" Name="',title, '" NumberOfComponents="1">'
|
||||
WRITE(cellFormat, "(A,I10, A)") "(", self%numCells, "(I10))"
|
||||
WRITE(fileID, cellFormat) (self%cells(n)%obj%tallyColl(k)%tally(c), n = 1, self%numCells)
|
||||
WRITE(fileID, "(10X, A)") '</DataArray>'
|
||||
|
||||
END DO
|
||||
END DO
|
||||
WRITE(fileID,"(8X,A)") '</CellData>'
|
||||
|
||||
END SUBROUTINE writeCollOutput
|
||||
|
||||
SUBROUTINE writeEM(self, fileID)
|
||||
USE moduleMesh
|
||||
USE moduleRefParam
|
||||
IMPLICIT NONE
|
||||
|
||||
CLASS(meshParticles), INTENT(in):: self
|
||||
INTEGER, INTENT(in):: fileID
|
||||
CHARACTER(LEN=25):: nodeFormat
|
||||
CHARACTER(LEN=25):: cellFormat
|
||||
INTEGER:: n
|
||||
REAL(8):: Xi(1:3)
|
||||
|
||||
Xi = (/ 0.D0, 0.D0, 0.D0 /)
|
||||
|
||||
!Points in nodes
|
||||
WRITE(fileID,"(8X,A)") '<PointData>'
|
||||
!Electric potential
|
||||
WRITE(fileID,"(10X,A)") '<DataArray type="Float64" Name="Potential (V)" NumberOfComponents="1">'
|
||||
WRITE(nodeFormat, "(A,I10, A)") "(", self%numNodes, "(1(ES20.6E3)))"
|
||||
WRITE(fileID,nodeFormat) (self%nodes(n)%obj%emData%phi*Volt_ref, n = 1, self%numNodes)
|
||||
WRITE(fileID,"(10X,A)") '</DataArray>'
|
||||
!Magnetic Field
|
||||
WRITE(fileID,"(10X,A)") '<DataArray type="Float64" Name="Magnetic Field (T)" NumberOfComponents="3">'
|
||||
WRITE(nodeFormat, "(A,I10, A)") "(", self%numNodes, "(3(ES20.6E3)))"
|
||||
WRITE(fileID,nodeFormat) (self%nodes(n)%obj%emData%B*B_ref, n = 1, self%numNodes)
|
||||
WRITE(fileID,"(10X,A)") '</DataArray>'
|
||||
WRITE(fileID,"(8X,A)") '</PointData>'
|
||||
|
||||
!Cell Data
|
||||
WRITE(fileID,"(8X,A)") '<CellData>'
|
||||
!Electric field
|
||||
WRITE(fileID,"(10X,A, A, A)") '<DataArray type="Float64" Name="Electric Field (V m^-1)" NumberOfComponents="3">'
|
||||
WRITE(cellFormat, "(A,I10, A)") "(", self%numCells, "(3(ES20.6E3)))"
|
||||
WRITE(fileID, cellFormat) (self%cells(n)%obj%gatherElectricField(Xi)*EF_ref, n = 1, self%numCells)
|
||||
WRITE(fileID,"(10X,A)") '</DataArray>'
|
||||
WRITE(fileID,"(8X,A)") '</CellData>'
|
||||
|
||||
END SUBROUTINE writeEM
|
||||
|
||||
SUBROUTINE writeCollection(fileID, t, fileNameStep, fileNameCollection)
|
||||
USE moduleCaseParam
|
||||
USE moduleOutput
|
||||
USE moduleRefParam
|
||||
IMPLICIT NONE
|
||||
|
||||
INTEGER:: fileID
|
||||
INTEGER, INTENT(in):: t
|
||||
CHARACTER(*):: fileNameStep, fileNameCollection
|
||||
|
||||
IF (t == tInitial) THEN
|
||||
!Create collection file
|
||||
WRITE(*, "(6X,A15,A)") "Creating file: ", fileNameCollection
|
||||
OPEN (fileID + 1, file = path // folder // '/' // fileNameCollection)
|
||||
WRITE (fileID + 1, "(A)") '<VTKFile type="Collection">'
|
||||
WRITE (fileID + 1, "(2X, A)") '<Collection>'
|
||||
CLOSE(fileID + 1)
|
||||
|
||||
END IF
|
||||
|
||||
!Write iteration file in collection
|
||||
OPEN (fileID + 1, file = path // folder // '/' // fileNameCollection, ACCESS='APPEND')
|
||||
WRITE(fileID + 1, "(4X, A, ES20.6E3, A, A, A)") '<DataSet timestep="', DBLE(t)*tauMin*ti_ref,'" file="', fileNameStep,'"/>'
|
||||
|
||||
!Close collection file
|
||||
IF (t == tFinal) THEN
|
||||
WRITE (fileID + 1, "(2X, A)") '</Collection>'
|
||||
WRITE (fileID + 1, "(A)") '</VTKFile>'
|
||||
|
||||
END IF
|
||||
CLOSE(fileID + 1)
|
||||
|
||||
END SUBROUTINE writeCollection
|
||||
|
||||
SUBROUTINE printOutputVTK(self,t)
|
||||
USE moduleMesh
|
||||
USE moduleRefParam
|
||||
USE moduleSpecies
|
||||
USE moduleOutput
|
||||
USE moduleCaseParam
|
||||
IMPLICIT NONE
|
||||
|
||||
CLASS(meshParticles), INTENT(in):: self
|
||||
INTEGER, INTENT(in):: t
|
||||
INTEGER:: n, i, fileID
|
||||
CHARACTER(:), ALLOCATABLE:: fileName, fileNameCollection
|
||||
CHARACTER (LEN=iterationDigits):: tstring
|
||||
TYPE(outputFormat):: output(1:self%numNodes)
|
||||
|
||||
fileID = 60
|
||||
|
||||
DO i = 1, nSpecies
|
||||
WRITE(tstring, iterationFormat) t
|
||||
fileName= 'OUTPUT_' // tstring// '_' // species(i)%obj%name // '.vtu'
|
||||
|
||||
fileName = formatFileName(prefix, species(i)%obj%name, 'vtu', t)
|
||||
WRITE(*, "(6X,A15,A)") "Creating file: ", fileName
|
||||
OPEN (fileID, file = path // folder // '/' // fileName)
|
||||
|
||||
fileNameCollection = 'OUTPUT_Collection_' // species(i)%obj%name // '.pvd'
|
||||
IF (t == tInitial) THEN
|
||||
!Create collection file
|
||||
WRITE(*, "(6X,A15,A)") "Creating file: ", fileNameCollection
|
||||
OPEN (fileID + 1, file = path // folder // '/' // fileNameCollection)
|
||||
WRITE (fileID + 1, "(A)") '<VTKFile type="Collection">'
|
||||
WRITE (fileID + 1, "(2X, A)") '<Collection>'
|
||||
CLOSE(fileID + 1)
|
||||
CALL writeHeader(self%numNodes, self%numCells, fileID)
|
||||
|
||||
END IF
|
||||
CALL writeMesh(self, fileID)
|
||||
|
||||
!Write iteration file in collection
|
||||
OPEN (fileID + 1, file = path // folder // '/' // fileNameCollection, ACCESS='APPEND')
|
||||
WRITE(fileID + 1, "(4X, A, ES20.6E3, A, A, A)"), '<DataSet timestep="', t*ti_ref,'" file="', fileName,'"/>'
|
||||
CALL writeSpeciesOutput(self, fileID, i)
|
||||
|
||||
!Close collection file
|
||||
IF (t == tFinal) THEN
|
||||
WRITE (fileID + 1, "(2X, A)") '</Collection>'
|
||||
WRITE (fileID + 1, "(A)") '</VTKFile>'
|
||||
|
||||
END IF
|
||||
CLOSE(fileID + 1)
|
||||
|
||||
CALL writeFileHeader(self, fileID)
|
||||
|
||||
CALL writeFileMesh(self, fileID)
|
||||
|
||||
DO n = 1, self%numNodes
|
||||
CALL calculateOutput(self%nodes(n)%obj%output(i), output(n), self%nodes(n)%obj%v, species(i)%obj)
|
||||
|
||||
END DO
|
||||
|
||||
CALL writeNodeData(self, fileID, output)
|
||||
|
||||
CALL writeFileFooter(fileID)
|
||||
CALL writeFooter(fileID)
|
||||
|
||||
CLOSE(fileID)
|
||||
|
||||
!Write collection file for time plotting
|
||||
fileNameCollection = formatFileName(prefix, 'Collection_' // species(i)%obj%name, 'pvd')
|
||||
CALL writeCollection(fileID, t, fileName, filenameCollection)
|
||||
|
||||
END DO
|
||||
|
||||
END SUBROUTINE printOutputVTK
|
||||
|
||||
SUBROUTINE printCollVTK(self,t)
|
||||
USE moduleMesh
|
||||
USE moduleOutput
|
||||
IMPLICIT NONE
|
||||
|
||||
CLASS(meshGeneric), INTENT(in):: self
|
||||
INTEGER, INTENT(in):: t
|
||||
INTEGER:: n, i, fileID
|
||||
CHARACTER(:), ALLOCATABLE:: fileName, fileNameCollection
|
||||
CHARACTER (LEN=iterationDigits):: tstring
|
||||
TYPE(outputFormat):: output(1:self%numNodes)
|
||||
|
||||
fileID = 62
|
||||
|
||||
IF (collOutput) THEN
|
||||
fileName = formatFileName(prefix, 'Collisions', 'vtu', t)
|
||||
WRITE(*, "(6X,A15,A)") "Creating file: ", fileName
|
||||
OPEN (fileID, file = path // folder // '/' // fileName)
|
||||
|
||||
CALL writeHeader(self%numNodes, self%numCells, fileID)
|
||||
|
||||
CALL writeMesh(self, fileID)
|
||||
|
||||
CALL writeCollOutput(self, fileID)
|
||||
|
||||
CALL writeFooter(fileID)
|
||||
|
||||
CLOSE(fileID)
|
||||
|
||||
!Write collection file for time plotting
|
||||
fileNameCollection = formatFileName(prefix, 'Collection_Collisions', 'pvd')
|
||||
CALL writeCollection(fileID, t, fileName, filenameCollection)
|
||||
|
||||
END IF
|
||||
|
||||
END SUBROUTINE printCollVTK
|
||||
|
||||
SUBROUTINE printEMVTK(self, t)
|
||||
USE moduleMesh
|
||||
IMPLICIT NONE
|
||||
|
||||
CLASS(meshParticles), INTENT(in):: self
|
||||
INTEGER, INTENT(in):: t
|
||||
INTEGER:: fileID
|
||||
CHARACTER(:), ALLOCATABLE:: fileName, fileNameCollection
|
||||
|
||||
fileID = 64
|
||||
|
||||
IF (emOutput) THEN
|
||||
fileName = formatFileName(prefix, 'EMField', 'vtu', t)
|
||||
WRITE(*, "(6X,A15,A)") "Creating file: ", fileName
|
||||
OPEN (fileID, file = path // folder // '/' // fileName)
|
||||
|
||||
CALL writeHeader(self%numNodes, self%numCells, fileID)
|
||||
|
||||
CALL writeMesh(self, fileID)
|
||||
|
||||
CALL writeEM(self, fileID)
|
||||
|
||||
CALL writeFooter(fileID)
|
||||
|
||||
CLOSE(fileID)
|
||||
|
||||
!Write collection file for time plotting
|
||||
fileNameCollection = formatFileName(prefix, 'Collection_EMField', 'pvd')
|
||||
CALL writeCollection(fileID, t, fileName, filenameCollection)
|
||||
|
||||
END IF
|
||||
|
||||
END SUBROUTINE printEMVTK
|
||||
|
||||
END MODULE moduleMeshOutputVTK
|
||||
|
|
|
|||
|
|
@ -528,9 +528,11 @@ MODULE moduleSolver
|
|||
|
||||
CALL outputProbes(t)
|
||||
CALL mesh%printOutput(t)
|
||||
CALL printOutputVTK(mesh, t)
|
||||
CALL printOutputVTK(mesh, t) !TEMPORARY TO TEST VTK OUTPUT
|
||||
IF (ASSOCIATED(meshForMCC)) CALL meshForMCC%printColl(t)
|
||||
IF (ASSOCIATED(meshForMCC)) CALL printCollVTK(meshForMCC,t) !TEMPORARY TO TEST VTK OUTPUT
|
||||
CALL mesh%printEM(t)
|
||||
CALL printEMVTK(mesh, t) !TEMPORARY TO TEST VTK OUTPUT
|
||||
WRITE(*, "(5X,A21,I10,A1,I10)") "t/tFinal: ", t, "/", tFinal
|
||||
WRITE(*, "(5X,A21,I10)") "Particles: ", nPartOld
|
||||
IF (t == 0) THEN
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue