doc/user-manual/fpakc_UserManual.tex

@@ -401,9 +401,6 @@ make
           \item \textbf{bounraiesParticle}: Logical.
                                             Determines if the properties of the boundaries are written.
                                             \textit{Warning}: Not all particle models produce this output, only those whose properties change during the simulation.
-          \item \textbf{injects}: Logical.
-                                  Determines if the properties of the injection of particles are written.
-                                  \textit{Warning}: Not all injection types produce this output, only those whose properties change during the simulation.
           \item \textbf{probes}: Array of objects.
                                  Defines the probes employed for obtaining the distribution function at specific positions.
                                  See Sec.~\ref{sec:probing} for more information.
@@ -691,14 +688,6 @@ make
                             Units of $\unit{K}$
                             Array dimension $3$.
                             Temperature in each direction.
-          \item \textbf{type}: Character.
-                               Type of injection.
-                               Available values are:
-                               \begin{itemize}
-                               \item \textbf{constant}: The flow does not change.
-                                 This is the default value if none is provided.
-                               \item \textbf{quasiNeutral}: The weight of the injected species' particles is changed over time to keep a zero electric field at the boundary.
-                               \end{itemize}
           \item \textbf{physicalSurface}: Integer.
                                           Identification of the edge in the mesh file.
           \item \textbf{particlesPerEdge}: Integer.

src/fpakc.f90

@@ -1,39 +1,15 @@
 !  FPAKC main program
 PROGRAM fpakc
-  use moduleCompTime,  only: tStep,    &
+  USE moduleCompTime
-                             tEMField, &
+  USE moduleCaseParam
-                             tCoul,    &
+  USE moduleInput
-                             tColl,    &
+  USE moduleInject
-                             tPush,    &
+  USE moduleSolver
-                             tReset,   &
+  USE moduleMesh
-                             tWeight
+  USE moduleProbe
-  use omp_lib,         only: omp_get_wtime
+  USE moduleErrors
-  use moduleErrors,    only: criticalError, &
+  USE OMP_LIB
-                             verboseError
+  IMPLICIT NONE
-  use moduleInput,     only: readCOnfig, &
-                             initOutput
-  use moduleCaseParam, only: timeStep, &
-                             tInitial, &
-                             tFinal
-  use moduleProbe,     only: resetProbes
-  use moduleSolver,    only: doScatter, &
-                             doEMField, &
-                             doOutput,  &
-                             solver,    &
-                             doPushes,  &
-                             doReset,   &
-                             doAverage, &
-                             doInjects
-  use moduleMesh,      only: boundariesEM_update,       &
-                             boundariesEM_update,       &
-                             boundariesParticle_update, &
-                             mesh,                      &
-                             meshForMCC,                &
-                             doMCCollisions,            &
-                             doCollisions,              &
-                             doCoulombScattering
-  use moduleInject,    only: updateInjects
-  implicit none
 
   ! arg1 = Input argument 1 (input file)
   CHARACTER(200):: arg1
@@ -95,9 +71,6 @@ PROGRAM fpakc
     ! Update EM boundary models
     call boundariesEM_update()
 
-    ! Update injects
-    call updateInjects()
-
     !Checks if a species needs to me moved in this iteration
     CALL solver%updatePushSpecies()
 

src/modules/common/moduleRandom.f90

@@ -53,7 +53,7 @@ MODULE moduleRandom
       implicit none
 
       real(8):: rnd
-      real(8):: v1, v2
+      real(8):: v1, v2, Rsquare
 
       v1 = 0.d0
       do while (v1 <= 0.d0)
@@ -67,20 +67,19 @@ MODULE moduleRandom
     end function randomMaxwellian
 
     !Returns a random number in a Maxwellian distribution of mean 0 and width 1
-    function randomHalfMaxwellian() result(rnd)
+    FUNCTION randomHalfMaxwellian() RESULT(rnd)
       IMPLICIT NONE
 
-      real(8):: rnd
+      REAL(8):: rnd
-      real(8):: v1
+      REAL(8):: x
 
       rnd = 0.D0
-      v1 = 0.D0
+      x = 0.D0
-      do while (v1 == 0.D0)
+      DO WHILE (x == 0.D0)
-        v1 = random()
+        CALL RANDOM_NUMBER(x)
-      
+      END DO
-      end do
 
-      rnd = sqrt(-2.d0*log(v1))
+      rnd = DSQRT(-DLOG(x))
 
     END FUNCTION randomHalfMaxwellian
 

src/modules/common/velocityDistribution.f90

@@ -53,11 +53,12 @@ module velocityDistribution
     function randomVelMaxwellian(self) result (v)
       use moduleRandom
       implicit none
+
       class(velDistMaxwellian), intent(in):: self
       real(8):: v
       v = 0.D0
 
-      v = self%vTh*randomMaxwellian()
+      v = self%vTh*randomMaxwellian()/sqrt(2.d0)
 
     end function randomVelMaxwellian
 

src/modules/init/moduleInput.f90

@@ -493,7 +493,6 @@ MODULE moduleInput
       CALL config%get(object // '.numColl', collOutput, found)
       CALL config%get(object // '.EMField', emOutput, found)
       call config%get(object // '.boundariesParticle', boundaryParticleOutput, found)
-      call config%get(object // '.injects', injectOutput, found)
 
       CALL config%get(object // '.triggerCPUTime', triggerCPUTime, found)
       IF (.NOT. found) THEN
@@ -629,7 +628,6 @@ MODULE moduleInput
       USE moduleMesh
       USE moduleCaseParam
       USE moduleRefParam
-      use moduleOutput, only: collOutput
       USE OMP_LIB
       USE json_module
       IMPLICIT NONE
@@ -1428,19 +1426,53 @@ MODULE moduleInput
       CHARACTER(2):: iString
       CHARACTER(:), ALLOCATABLE:: object
       LOGICAL:: found
+      CHARACTER(:), ALLOCATABLE:: speciesName
+      CHARACTER(:), ALLOCATABLE:: name
+      REAL(8):: v
+      REAL(8), ALLOCATABLE:: temperature(:), normal(:)
+      REAL(8):: flow
+      CHARACTER(:), ALLOCATABLE:: units
+      INTEGER:: physicalSurface
+      INTEGER:: particlesPerEdge
+      INTEGER:: sp
 
       CALL config%info('inject', found, n_children = nInject)
-      ALLOCATE(injects(1:nInject))
+      ALLOCATE(inject(1:nInject))
+      nPartInj = 0
       DO i = 1, nInject
         WRITE(iString, '(i2)') i
         object = 'inject(' // trim(iString) // ')'
 
-        CALL initInject(injects(i)%obj, i, object, config)
+        !Find species
+        CALL config%get(object // '.species', speciesName, found)
+        sp = speciesName2Index(speciesName)
 
-        CALL readVelDistr(config, injects(i)%obj, object)
+        CALL config%get(object // '.name',            name,            found)
+        CALL config%get(object // '.v',               v,               found)
+        CALL config%get(object // '.T',               temperature,     found)
+        CALL config%get(object // '.n',               normal,          found)
+        IF (.NOT. found) THEN
+          ALLOCATE(normal(1:3))
+          normal = 0.D0
+        END IF
+        CALL config%get(object // '.flow',            flow,            found)
+        CALL config%get(object // '.units',           units,           found)
+        CALL config%get(object // '.physicalSurface', physicalSurface, found)
+        particlesPerEdge = 0
+        CALL config%get(object // '.particlesPerEdge', particlesPerEdge, found)
+
+        CALL inject(i)%init(i, v, normal, temperature, flow, units, sp, physicalSurface, particlesPerEdge)
+
+        CALL readVelDistr(config, inject(i), object)
         
       END DO
 
+      !Allocate array for injected particles
+      IF (nPartInj > 0) THEN
+        ALLOCATE(partInj(1:nPartInj))
+
+      END IF
+      
     END SUBROUTINE readInject
 
     SUBROUTINE readAverage(config)
@@ -1490,7 +1522,7 @@ MODULE moduleInput
       IMPLICIT NONE
 
       TYPE(json_file), INTENT(inout):: config
-      class(injectGeneric), INTENT(inout):: inj
+      TYPE(injectGeneric), INTENT(inout):: inj
       CHARACTER(:), ALLOCATABLE, INTENT(in):: object
       INTEGER:: i
       CHARACTER(2):: iString

src/modules/makefile

@@ -14,7 +14,7 @@ output.o: moduleSpecies.o common.o
 mesh.o: moduleList.o moduleSpecies.o moduleCollisions.o moduleCoulomb.o output.o common.o 
 	$(MAKE) -C mesh all
 
-solver.o: moduleInject.o moduleSpecies.o moduleProbe.o common.o output.o mesh.o
+solver.o: moduleSpecies.o moduleProbe.o common.o output.o mesh.o
 	$(MAKE) -C solver all
 
 init.o: common.o solver.o moduleInject.o

src/modules/mesh/inout/gmsh2/moduleMeshOutputGmsh2.f90

@@ -1,5 +1,4 @@
 MODULE moduleMeshOutputGmsh2
-  use moduleOutput, only: prefix, informFileCreation, formatFileName, generateFilePath
 
   CONTAINS
     !Header for mesh format
@@ -17,7 +16,7 @@ MODULE moduleMeshOutputGmsh2
     !Node data subroutines
     !Header
     SUBROUTINE writeGmsh2HeaderNodeData(fileID, title, iteration, time, dimensions, nNodes)
-      use moduleOutput, only: fmtInt, fmtReal
+      use moduleOutput
       IMPLICIT NONE
 
       INTEGER, INTENT(in):: fileID
@@ -51,7 +50,7 @@ MODULE moduleMeshOutputGmsh2
     !Element data subroutines
     !Header
     SUBROUTINE writeGmsh2HeaderElementData(fileID, title, iteration, time, dimensions, nVols)
-      use moduleOutput, only: fmtInt, fmtReal
+      use moduleOutput
       IMPLICIT NONE
 
       INTEGER, INTENT(in):: fileID
@@ -87,7 +86,7 @@ MODULE moduleMeshOutputGmsh2
       USE moduleMesh
       USE moduleRefParam
       USE moduleSpecies
-      use moduleOutput, only: outputFormat, calculateOutput, fmtReal
+      USE moduleOutput
       USE moduleCaseParam, ONLY: timeStep
       IMPLICIT NONE
 
@@ -142,7 +141,7 @@ MODULE moduleMeshOutputGmsh2
       USE moduleRefParam
       USE moduleCaseParam
       USE moduleCollisions
-      use moduleOutput, only: collOutput, fmtInt
+      USE moduleOutput
       IMPLICIT NONE
 
       CLASS(meshGeneric), INTENT(in):: self
@@ -200,7 +199,7 @@ MODULE moduleMeshOutputGmsh2
       USE moduleMesh
       USE moduleRefParam
       USE moduleCaseParam
-      use moduleOutput, only: emOutput
+      USE moduleOutput
       IMPLICIT NONE
 
       CLASS(meshParticles), INTENT(in):: self
@@ -249,6 +248,7 @@ MODULE moduleMeshOutputGmsh2
       USE moduleMesh
       USE moduleRefParam
       USE moduleSpecies
+      USE moduleOutput
       USE moduleAverage
       IMPLICIT NONE
 

src/modules/mesh/inout/text/moduleMeshOutputText.f90

@@ -1,14 +1,9 @@
 module moduleMeshOutputText
-  use moduleOutput, only: prefix,             &
-                          informFileCreation, &
-                          formatFileName,     &
-                          generateFilePath
-
   contains
 
     subroutine writeSpeciesOutput(self, fileID, speciesIndex)
       use moduleMesh
-      use moduleOutput, only: calculateOutput, outputFormat
+      use moduleOutput
       use moduleRefParam, only: L_ref
       implicit none
 
@@ -93,6 +88,7 @@ module moduleMeshOutputText
                                   speciesIndex)
 
       use moduleMesh
+      use moduleOutput
       use moduleAverage
       use moduleRefParam, only: L_ref
       implicit none
@@ -155,8 +151,8 @@ module moduleMeshOutputText
 
     subroutine printCollText(self)
       use moduleMesh
+      use moduleOutput
       use moduleCaseParam, only: timeStep
-      use moduleOutput, only: collOutput
       implicit none
       
       class(meshGeneric), intent(in):: self
@@ -194,7 +190,6 @@ module moduleMeshOutputText
     subroutine printEMText(self)
       use moduleMesh
       use moduleCaseParam, only: timeStep
-      use moduleOutput, only: emOutput
       implicit none
       
       class(meshParticles), intent(in):: self
@@ -241,7 +236,7 @@ module moduleMeshOutputText
 
         write(fileIDMean, '(5(A,","),A)') '"Position (m)"', &
                                           '"Density, mean (m^-3)"', &
-                                          '"Velocity, mean (m s^-1):0"', '"Velocity, mean (m s^-1):1"', '"Velocity, mean (m s^-1):2"', &
+                                          '"Velocity, mean (m s^-1):0"', '"Velocity (m s^-1):1"', '"Velocity (m s^-1):2"', &
                                           '"Temperature, mean (K)"'
 
         fileNameDeviation = formatFileName('Average_deviation', species(s)%obj%name, 'csv')
@@ -250,7 +245,7 @@ module moduleMeshOutputText
 
         write(fileIDDeviation, '(5(A,","),A)') '"Position (m)"', &
                                                '"Density, deviation (m^-3)"', &
-                                               '"Velocity, deviation (m s^-1):0"', 'Velocity, deviation (m s^-1):1"', 'Velocity, deviation (m s^-1):2"', &
+                                               '"Velocity, deviation (m s^-1):0"', 'Velocity (m s^-1):1"', 'Velocity (m s^-1):2"', &
                                                '"Temperature, deviation (K)"'
 
         call writeAverage(self, fileIDMean, fileIDDeviation, s)

src/modules/mesh/inout/vtu/moduleMeshOutputVTU.f90

@@ -1,11 +1,9 @@
 MODULE moduleMeshOutputVTU
-  use moduleOutput, only: prefix, informFileCreation, formatFileName, generateFilePath
 
   CONTAINS
 
     SUBROUTINE writeHeader(nNodes, nCells, fileID)
       USE moduleMesh
-      use moduleOutput, only: fmtInt
       IMPLICIT NONE
 
       INTEGER, INTENT(in):: nNodes, nCells
@@ -79,7 +77,6 @@ MODULE moduleMeshOutputVTU
     SUBROUTINE writeMesh(self, fileID)
       USE moduleMesh
       USE moduleRefParam
-      use moduleOutput, only: fmtReal, fmtInt
       IMPLICIT NONE
 
       CLASS(meshGeneric), INTENT(in):: self
@@ -162,7 +159,6 @@ MODULE moduleMeshOutputVTU
     SUBROUTINE writeCollOutput(self,fileID)
       USE moduleMesh
       USE moduleCollisions
-      use moduleOutput, only: fmtInt
       IMPLICIT NONE
 
       CLASS(meshGeneric), INTENT(in):: self
@@ -189,7 +185,6 @@ MODULE moduleMeshOutputVTU
     SUBROUTINE writeEM(self, fileID)
       USE moduleMesh
       USE moduleRefParam
-      use moduleOutput, only: fmtReal
       IMPLICIT NONE
 
       CLASS(meshParticles), INTENT(in):: self
@@ -386,7 +381,6 @@ MODULE moduleMeshOutputVTU
     SUBROUTINE printEMVTU(self)
       USE moduleMesh
       USE moduleCaseParam, ONLY: timeStep
-      use moduleOutput, only: emOutput
       IMPLICIT NONE
 
       CLASS(meshParticles), INTENT(in):: self
@@ -420,6 +414,7 @@ MODULE moduleMeshOutputVTU
 
     SUBROUTINE printAverageVTU(self)
       USE moduleMesh
+      use moduleOutput
       USE moduleSpecies
       IMPLICIT NONE
 

src/modules/mesh/moduleMesh.f90

@@ -1,7 +1,7 @@
 !moduleMesh: General module for Finite Element mesh
 MODULE moduleMesh
   USE moduleList
-  USE moduleOutput, only: outputNode, emNode
+  USE moduleOutput
   USE moduleCollisions
   use moduleSpecies, only: nSpecies
 
@@ -663,6 +663,50 @@ MODULE moduleMesh
 
   end type boundaryParticleGeneric
 
+  interface
+    ! Init interfaces
+    ! wallTemeprature
+    module subroutine wallTemperature_init(boundary, T, c)
+      CLASS(boundaryParticleGeneric), ALLOCATABLE, INTENT(inout):: boundary
+      REAL(8), INTENT(in):: T, c !Wall temperature and specific heat
+
+    end subroutine wallTemperature_init
+
+    module subroutine ionization_init(boundary, mImpact, m0, n0, v0, T0, ion, effTime, crossSection, eThreshold, electronSecondary)
+      class(boundaryParticleGeneric), allocatable, intent(inout):: boundary
+      real(8), intent(in):: mImpact
+      real(8), intent(in):: m0, n0, v0(1:3), T0 !Neutral properties
+      integer, intent(in):: ion
+      real(8), intent(in):: effTime
+      character(:), allocatable, intent(in):: crossSection
+      real(8), intent(in):: eThreshold
+      integer, optional, intent(in):: electronSecondary
+
+    end subroutine ionization_init
+
+    ! quasiNeutrality
+    module subroutine quasiNeutrality_init(boundary, s_incident)
+      class(boundaryParticleGeneric), allocatable, intent(inout):: boundary
+      integer, intent(in):: s_incident
+
+    end subroutine quasiNeutrality_init
+
+    ! outflowAdaptive
+    module subroutine outflowAdaptive_init(boundary, s_incident)
+      class(boundaryParticleGeneric), allocatable, intent(inout):: boundary
+      integer, intent(in):: s_incident
+
+    end subroutine outflowAdaptive_init
+
+    ! Get the index of the species from its name
+    module function boundaryParticleName_to_Index(boundaryName) result(bp)
+      character(:), allocatable:: boundaryName
+      integer:: bp
+
+    end function boundaryParticleName_to_Index
+
+  end interface
+
   abstract interface
     ! Apply the effects of the boundary to the particle
     subroutine applyParticle_interface(self, edge, part)
@@ -701,18 +745,6 @@ MODULE moduleMesh
 
   END TYPE boundaryReflection
 
-  interface
-    module subroutine reflection_apply(self, edge, part)
-      use moduleSpecies
-
-      class(boundaryReflection), intent(inout):: self
-      class(meshEdge), intent(inout):: edge
-      class(particle), intent(inout):: part
-
-    end subroutine reflection_apply
-
-  end interface
-
   !Absorption boundary
   TYPE, PUBLIC, EXTENDS(boundaryParticleGeneric):: boundaryAbsorption
     CONTAINS
@@ -720,18 +752,6 @@ MODULE moduleMesh
 
   END TYPE boundaryAbsorption
 
-  interface
-    module subroutine absorption_apply(self, edge, part)
-      use moduleSpecies
-
-      class(boundaryAbsorption), intent(inout):: self
-      class(meshEdge), intent(inout):: edge
-      class(particle), intent(inout):: part
-
-    end subroutine absorption_apply
-
-  end interface
-
   !Transparent boundary
   TYPE, PUBLIC, EXTENDS(boundaryParticleGeneric):: boundaryTransparent
     CONTAINS
@@ -739,18 +759,6 @@ MODULE moduleMesh
 
   END TYPE boundaryTransparent
 
-  interface
-    module subroutine transparent_apply(self, edge, part)
-      use moduleSpecies
-
-      class(boundaryTransparent), intent(inout):: self
-      class(meshEdge), intent(inout):: edge
-      class(particle), intent(inout):: part
-
-    end subroutine transparent_apply
-
-  end interface
-
   !Symmetry axis
   TYPE, PUBLIC, EXTENDS(boundaryParticleGeneric):: boundaryAxis
     CONTAINS
@@ -758,18 +766,6 @@ MODULE moduleMesh
 
   END TYPE boundaryAxis
 
-  interface
-    module subroutine symmetryAxis_apply(self, edge, part)
-      use moduleSpecies
-
-      class(boundaryAxis), intent(inout):: self
-      class(meshEdge), intent(inout):: edge
-      class(particle), intent(inout):: part
-
-    end subroutine symmetryAxis_apply
-
-  end interface
-
   !Wall Temperature boundary
   TYPE, PUBLIC, EXTENDS(boundaryParticleGeneric):: boundaryWallTemperature
     !Thermal velocity of the wall: square root(Wall temperature X specific heat)
@@ -779,24 +775,6 @@ MODULE moduleMesh
 
   END TYPE boundaryWallTemperature
 
-  interface
-    module subroutine wallTemperature_init(boundary, T, c)
-      CLASS(boundaryParticleGeneric), ALLOCATABLE, INTENT(inout):: boundary
-      REAL(8), INTENT(in):: T, c !Wall temperature and specific heat
-
-    end subroutine wallTemperature_init
-
-    module subroutine wallTemperature_apply(self, edge, part)
-      use moduleSpecies
-
-      class(boundaryWallTemperature), intent(inout):: self
-      class(meshEdge), intent(inout):: edge
-      class(particle), intent(inout):: part
-
-    end subroutine wallTemperature_apply
-
-  end interface
-
   !Ionization boundary
   TYPE, PUBLIC, EXTENDS(boundaryParticleGeneric):: boundaryIonization
     REAL(8):: m0, n0, v0(1:3), vTh !Properties of background neutrals.
@@ -813,30 +791,6 @@ MODULE moduleMesh
 
   END TYPE boundaryIonization
 
-  interface
-    module subroutine ionization_init(boundary, mImpact, m0, n0, v0, T0, ion, effTime, crossSection, eThreshold, electronSecondary)
-      class(boundaryParticleGeneric), allocatable, intent(inout):: boundary
-      real(8), intent(in):: mImpact
-      real(8), intent(in):: m0, n0, v0(1:3), T0 !Neutral properties
-      integer, intent(in):: ion
-      real(8), intent(in):: effTime
-      character(:), allocatable, intent(in):: crossSection
-      real(8), intent(in):: eThreshold
-      integer, optional, intent(in):: electronSecondary
-
-    end subroutine ionization_init
-
-    module subroutine ionization_apply(self, edge, part)
-      use moduleSpecies
-
-      class(boundaryIonization), intent(inout):: self
-      class(meshEdge), intent(inout):: edge
-      class(particle), intent(inout):: part
-
-    end subroutine ionization_apply
-
-  end interface
-
   ! Ensures quasi-neutrality by changing the reflection coefficient
   type, public, extends(boundaryParticleGeneric):: boundaryQuasiNeutrality
     real(8), allocatable:: alpha(:) ! Reflection parameter
@@ -847,24 +801,6 @@ MODULE moduleMesh
 
   end type boundaryQuasiNeutrality
 
-  interface
-    module subroutine quasiNeutrality_init(boundary, s_incident)
-      class(boundaryParticleGeneric), allocatable, intent(inout):: boundary
-      integer, intent(in):: s_incident
-
-    end subroutine quasiNeutrality_init
-
-    module subroutine quasiNeutrality_apply(self, edge, part)
-      use moduleSpecies
-
-      class(boundaryQuasiNeutrality), intent(inout):: self
-      class(meshEdge), intent(inout):: edge
-      class(particle), intent(inout):: part
-
-    end subroutine quasiNeutrality_apply
-
-  end interface
-
   !Boundary for quasi-neutral outflow adjusting reflection coefficient
   type, public, extends(boundaryParticleGeneric):: boundaryOutflowAdaptive
     real(8), allocatable:: velocity_shift(:)
@@ -876,11 +812,68 @@ MODULE moduleMesh
   end type boundaryOutflowAdaptive
 
   interface
-    module subroutine outflowAdaptive_init(boundary, s_incident)
+    module subroutine reflection_apply(self, edge, part)
-      class(boundaryParticleGeneric), allocatable, intent(inout):: boundary
+      use moduleSpecies
-      integer, intent(in):: s_incident
 
-    end subroutine outflowAdaptive_init
+      class(boundaryReflection), intent(inout):: self
+      class(meshEdge), intent(inout):: edge
+      class(particle), intent(inout):: part
+
+    end subroutine reflection_apply
+
+    module subroutine absorption_apply(self, edge, part)
+      use moduleSpecies
+
+      class(boundaryAbsorption), intent(inout):: self
+      class(meshEdge), intent(inout):: edge
+      class(particle), intent(inout):: part
+
+    end subroutine absorption_apply
+
+    module subroutine transparent_apply(self, edge, part)
+      use moduleSpecies
+
+      class(boundaryTransparent), intent(inout):: self
+      class(meshEdge), intent(inout):: edge
+      class(particle), intent(inout):: part
+
+    end subroutine transparent_apply
+
+    module subroutine symmetryAxis_apply(self, edge, part)
+      use moduleSpecies
+
+      class(boundaryAxis), intent(inout):: self
+      class(meshEdge), intent(inout):: edge
+      class(particle), intent(inout):: part
+
+    end subroutine symmetryAxis_apply
+
+    module subroutine wallTemperature_apply(self, edge, part)
+      use moduleSpecies
+
+      class(boundaryWallTemperature), intent(inout):: self
+      class(meshEdge), intent(inout):: edge
+      class(particle), intent(inout):: part
+
+    end subroutine wallTemperature_apply
+
+    module subroutine ionization_apply(self, edge, part)
+      use moduleSpecies
+
+      class(boundaryIonization), intent(inout):: self
+      class(meshEdge), intent(inout):: edge
+      class(particle), intent(inout):: part
+
+    end subroutine ionization_apply
+
+    module subroutine quasiNeutrality_apply(self, edge, part)
+      use moduleSpecies
+
+      class(boundaryQuasiNeutrality), intent(inout):: self
+      class(meshEdge), intent(inout):: edge
+      class(particle), intent(inout):: part
+
+    end subroutine quasiNeutrality_apply
 
     module subroutine outflowAdaptive_apply(self, edge, part)
       use moduleSpecies
@@ -891,10 +884,7 @@ MODULE moduleMesh
 
     end subroutine outflowAdaptive_apply
 
-  end interface
+    ! Generic basic boundary conditions to use internally in the code
-
-  ! Generic basic boundary conditions to use internally in the code
-  interface
     module subroutine genericReflection(edge, part) 
       use moduleSpecies
 
@@ -937,13 +927,6 @@ MODULE moduleMesh
   type(boundaryParticleCont), allocatable, target:: boundariesParticle(:)
 
   interface 
-    ! Get the index of the species from its name
-    module function boundaryParticleName_to_Index(boundaryName) result(bp)
-      character(:), allocatable:: boundaryName
-      integer:: bp
-
-    end function boundaryParticleName_to_Index
-
     ! Update the particle boundary models
     module subroutine boundariesParticle_update()
 
@@ -969,6 +952,33 @@ MODULE moduleMesh
 
   end type boundaryEMGeneric
 
+  interface
+    module subroutine initDirichlet(self, config, object)
+      use json_module
+
+      class(boundaryEMGeneric), allocatable, intent(inout):: self
+      type(json_file), intent(inout):: config
+      character(:), allocatable, intent(in):: object
+
+    end subroutine initDirichlet
+
+    module subroutine initDirichletTime(self, config, object)
+      use json_module
+
+      class(boundaryEMGeneric), allocatable, intent(inout):: self
+      type(json_file), intent(inout):: config
+      character(:), allocatable, intent(in):: object
+
+    end subroutine initDirichletTime
+
+    module function boundaryEMName_to_Index(boundaryName) result(bp)
+      character(:), allocatable:: boundaryName
+      integer:: bp
+
+    end function boundaryEMName_to_Index
+
+  end interface
+
   abstract interface
     ! Apply boundary condition to the load vector for the Poission equation
     subroutine applyEM_interface(self, vectorF)
@@ -998,24 +1008,6 @@ MODULE moduleMesh
 
   END TYPE boundaryEMDirichlet
 
-  interface
-    module subroutine initDirichlet(self, config, object)
-      use json_module
-
-      class(boundaryEMGeneric), allocatable, intent(inout):: self
-      type(json_file), intent(inout):: config
-      character(:), allocatable, intent(in):: object
-
-    end subroutine initDirichlet
-
-    module subroutine applyDirichlet(self, vectorF)
-      class(boundaryEMDirichlet), intent(in):: self
-      real(8), intent(inout):: vectorF(:)
-
-    end subroutine applyDirichlet
-
-  end interface
-
   TYPE, EXTENDS(boundaryEMGeneric):: boundaryEMDirichletTime
     real(8):: potential
     real(8):: timeFactor
@@ -1027,14 +1019,11 @@ MODULE moduleMesh
   END TYPE boundaryEMDirichletTime
 
   interface
-    module subroutine initDirichletTime(self, config, object)
+    module subroutine applyDirichlet(self, vectorF)
-      use json_module
+      class(boundaryEMDirichlet), intent(in):: self
+      real(8), intent(inout):: vectorF(:)
 
-      class(boundaryEMGeneric), allocatable, intent(inout):: self
+    end subroutine applyDirichlet
-      type(json_file), intent(inout):: config
-      character(:), allocatable, intent(in):: object
-
-    end subroutine initDirichletTime
 
     module subroutine applyDirichletTime(self, vectorF)
       class(boundaryEMDirichletTime), intent(in):: self
@@ -1058,12 +1047,6 @@ MODULE moduleMesh
 
   ! Update the EM boundary models
   interface 
-    module function boundaryEMName_to_Index(boundaryName) result(bp)
-      character(:), allocatable:: boundaryName
-      integer:: bp
-
-    end function boundaryEMName_to_Index
-
     module subroutine boundariesEM_update()
 
     end subroutine boundariesEM_update

src/modules/mesh/moduleMesh@boundaryEM.f90

@@ -56,7 +56,6 @@ submodule(moduleMesh) boundaryEM
       use json_module
       use moduleRefParam, ONLY: Volt_ref, ti_ref
       use moduleErrors
-      use moduleOutput, only: path
       implicit none
 
       class(boundaryEMGeneric), allocatable, intent(inout):: self

src/modules/mesh/moduleMesh@boundaryParticle.f90

@@ -342,7 +342,6 @@ submodule(moduleMesh) boundaryParticle
 
     ! Print
     subroutine ionization_print(self, fileID)
-      use moduleOutput, only: fmtInt
       implicit none
 
       class(boundaryParticleGeneric), intent(inout):: self
@@ -474,7 +473,6 @@ submodule(moduleMesh) boundaryParticle
 
     ! Print output
     subroutine quasiNeutrality_print(self, fileID)
-      use moduleOutput, only: fmtColInt, fmtColReal
       implicit none
 
       class(boundaryParticleGeneric), intent(inout):: self
@@ -615,7 +613,6 @@ submodule(moduleMesh) boundaryParticle
 
     ! Print
     subroutine outflowAdaptive_print(self, fileID)
-      use moduleOutput, only: fmtColInt, fmtColReal
       implicit none
 
       class(boundaryParticleGeneric), intent(inout):: self
@@ -694,12 +691,7 @@ submodule(moduleMesh) boundaryParticle
     ! Writes the output into the Step_XXXXX_boundaryParticles file when the %print procedure is associated
     module subroutine boundariesParticle_write()
       use moduleCaseparam, only: timeStep
-      use moduleOutput, only: fileID_boundaryParticle, &
+      use moduleOutput, only:fileID_boundaryParticle, formatFileName, informFileCreation
-                              formatFileName, &
-                              informFileCreation,&
-                              boundaryParticleOutput,&
-                              generateFilePath, &
-                              prefix
       implicit none
 
       integer:: b
@@ -708,7 +700,7 @@ submodule(moduleMesh) boundaryParticle
       if (boundaryParticleOutput) then
         fileName = formatFileName(prefix, 'boundariesParticle', 'csv', timeStep)
         call informFileCreation(fileName)
-        open(fileID_boundaryParticle, file = generateFilePath(fileName))
+        open(fileID_boundaryParticle, file = path // folder // '/' //  fileName)
 
         do b = 1, nBoundariesParticle
           if (associated(boundariesParticle(b)%obj%print)) then

src/modules/moduleInject.f90

@@ -5,14 +5,14 @@ MODULE moduleInject
   use moduleMesh, only: meshEdgePointer
 
   !Generic injection of particles
-  TYPE, abstract:: injectGeneric
+  TYPE:: injectGeneric
     INTEGER:: id
     CHARACTER(:), ALLOCATABLE:: name
     REAL(8):: vMod !Velocity (module)
     REAL(8):: temperature(1:3) !Temperature
     REAL(8):: n(1:3) !Direction of injection
     LOGICAL:: fixDirection !The injection of particles has a fix direction defined by n
-    INTEGER:: nParticles !Number of particles to inject each time step
+    INTEGER:: nParticles !Number of particles to introduce each time step
     CLASS(speciesGeneric), POINTER:: species !Species of injection
     INTEGER:: nEdges
     type(meshEdgePointer), allocatable:: edges(:)
@@ -20,125 +20,38 @@ MODULE moduleInject
     REAL(8), ALLOCATABLE:: weightPerEdge(:) ! Weight per edge
     REAL(8):: surface ! Total surface of injection
     TYPE(velDistCont):: v(1:3) !Velocity distribution function in each direction
-    procedure(updateInject_interface), pointer, pass:: update => null()
-    procedure(printInject_interface),  pointer, pass:: print  => null()
     CONTAINS
+      PROCEDURE, PASS:: init         => initInject
       PROCEDURE, PASS:: addParticles
 
   END TYPE injectGeneric
 
-  abstract interface
-    ! Update the values of the particle boundary model
-    subroutine updateInject_interface(self)
-      import injectGeneric
-
-      class(injectGeneric), intent(inout):: self
-
-    end subroutine updateInject_interface
-
-    ! Write the values of the particle boundary model
-    subroutine printInject_interface(self, fileID)
-      import injectGeneric
-
-      class(injectGeneric), intent(inout):: self
-      integer, intent(in):: fileID
-
-    end subroutine printInject_interface
-
-  end interface
-
-  ! Default type, constant inject of particles
-  type, extends(injectGeneric):: injectConstant
-
-  end type injectconstant
-
-  type, extends(injectGeneric):: injectQuasiNeutral
-    real(8):: qSign_incident
-
-  end type injectQuasiNeutral
-
-  ! Wrapper for injects
-  type:: injectWrapper
-    class(injectGeneric), allocatable:: obj
-
-  end type injectWrapper
-
   INTEGER:: nInject
-  TYPE(injectWrapper), ALLOCATABLE, target:: injects(:)
+  TYPE(injectGeneric), ALLOCATABLE:: inject(:)
 
   CONTAINS
     !Initialize an injection of particles
-    SUBROUTINE initInject(self, i, object, config)
+    SUBROUTINE initInject(self, i, v, n, temperature, flow, units, sp, ps, particlesPerEdge)
       USE moduleMesh
       USE moduleRefParam
       USE moduleConstParam
       USE moduleSpecies
+      USE moduleSolver
       USE moduleErrors
-      use json_module
       IMPLICIT NONE
 
-      CLASS(injectGeneric), allocatable, INTENT(inout):: self
+      CLASS(injectGeneric), INTENT(inout):: self
       INTEGER, INTENT(in):: i
-      character(:), allocatable, intent(in):: object
+      REAL(8), INTENT(in):: v, n(1:3), temperature(1:3)
-      type(json_file), intent(inout):: config
+      INTEGER, INTENT(in):: sp, ps, particlesPerEdge
-      character(:), allocatable:: type
-      logical:: found
-      REAL(8):: v
-      real(8), allocatable:: n(:), temperature(:)
-      INTEGER:: sp, ps, particlesPerEdge
-      character(:), allocatable:: speciesName
       integer:: ps_index
       REAL(8):: tauInject
-      REAL(8):: flow
+      REAL(8), INTENT(in):: flow
-      CHARACTER(:), ALLOCATABLE:: units
+      CHARACTER(:), ALLOCATABLE, INTENT(in):: units
       INTEGER:: e
       REAL(8):: fluxPerStep = 0.D0
 
-      !Type of injection
+      self%id          =  i
-      call config%get(object // '.type',            type,        found)
-      if (.not. found) then
-        ! If no type is found, assume constant injection of particles
-        type = 'constant'
-      end if
-
-      ! Assign type to inject and allocates it
-      select case(type)
-      case ('constant')
-        allocate(injectConstant:: self)
-
-      case ('quasiNeutral')
-        allocate(injectQuasiNeutral:: self)
-
-        self%update => updateQuasiNeutral
-        self%print  => printQuasiNeutral
-
-      case default
-        call criticalError('No injection type ' // type // ' defined', 'initInject')
-      end select
-
-      self%id =  i
-      call config%get(object // '.name',             self%name,        found)
-
-      !Find species
-      CALL config%get(object // '.species', speciesName, found)
-      sp = speciesName2Index(speciesName)
-
-      ! Velocity and direction of injection
-      call config%get(object // '.v',                v,                found)
-      call config%get(object // '.n',                n,                found)
-      if (.not. found) then
-        allocate(n(1:3))
-        n = 0.D0
-      end if
-      ! Temperature of injection
-      call config%get(object // '.T',                temperature,      found)
-      ! Flow
-      call config%get(object // '.flow',             flow,             found)
-      call config%get(object // '.units',            units,            found)
-      CALL config%get(object // '.physicalSurface',  ps,               found)
-      particlesPerEdge = 0
-      CALL config%get(object // '.particlesPerEdge', particlesPerEdge, found)
-
       self%vMod        =  v / v_ref
       self%n           =  n / NORM2(n)
       self%temperature =  temperature / T_ref
@@ -211,6 +124,8 @@ MODULE moduleInject
 
         END DO
 
+        self%nParticles = SUM(self%particlesPerEdge)
+
       ELSE
         ! No particles assigned per edge, use the species weight
         self%weightPerEdge = self%species%weight
@@ -218,235 +133,56 @@ MODULE moduleInject
           self%particlesPerEdge(e) = max(1,FLOOR(fluxPerStep*self%edges(e)%obj%surface / self%species%weight))
         END DO
 
+        self%nParticles = SUM(self%particlesPerEdge)
+
         !Rescale weight to match flux
         self%weightPerEdge = fluxPerStep * self%surface / (real(self%nParticles))
 
       END IF
 
-      ! Total number of particles to inject
-      self%nParticles = SUM(self%particlesPerEdge)
-
       !Scale particles for different species steps
       IF (self%nParticles == 0) CALL criticalError("The number of particles for inject is 0.", 'initInject')
 
-      ! Specific parameters per type
-      select type(self)
-      type is(injectQuasiNeutral)
-        ! Get the sign of the charged species
-        self%qSign_incident = sign(1.d0, self%species%qm)
-
-      end select
-
     END SUBROUTINE initInject
 
-    ! Update the value of injects
+    !Injection of particles
-    subroutine updateInjects()
+    SUBROUTINE doInjects()
-      implicit none
-      
-      integer:: i
-
-      do i = 1, nInject
-        if (associated(injects(i)%obj%update)) then
-          call injects(i)%obj%update()
-
-        end if
-
-      end do
-
-    end subroutine updateInjects
-
-    ! Updates the flow in the injection to maintain quasineutrality
-    subroutine updateQuasiNeutral(self)
-      use moduleMesh, only: meshEdge, meshCell
-      implicit none
-
-      class(injectGeneric), intent(inout):: self
-      integer:: e
-      class(meshEdge), pointer:: edge
-      class(meshCell), pointer:: cell
-      real(8):: Xi(1:3)
-      real(8):: EF_normal
-      real(8):: alpha
-
-      select type(self)
-      type is (injectQuasiNeutral)
-        do e = 1, self%nEdges
-          edge => self%edges(e)%obj
-
-          Xi = edge%centerXi()
-
-          if (associated(edge%e1)) then
-            cell => edge%e1
-
-          else
-            cell => edge%e2
-
-          end if
-
-          ! Projection of EF on the edge normal vector
-          EF_normal = dot_product(cell%gatherElectricField(Xi), edge%normal)
-
-          ! Correction for this time step
-          alpha = self%qSign_incident * EF_normal
-
-          ! Adjust the weight of particles to match the new current
-          self%weightPerEdge(e) = self%weightPerEdge(e) + 1.0d-1 * alpha
-
-          ! Limit the weight of a macroparticle to 1.0
-          self%weightPerEdge(e) = max(self%weightPerEdge(e), 1.d0)
-
-        end do
-
-      end select
-
-    end subroutine updateQuasiNeutral
-
-    !Add particles for the injection
-    SUBROUTINE addParticles(self)
       USE moduleSpecies
-      USE moduleMesh
+      USE moduleSolver
-      USE moduleRandom
-      USE moduleErrors
-      use moduleList, only: partInj
       IMPLICIT NONE
 
-      CLASS(injectGeneric), INTENT(in):: self
+      INTEGER:: i
-      type(particle), pointer:: part
+      
-      INTEGER:: i, e
+      !$OMP SINGLE
-      INTEGER:: sp
+      nPartInj = 0
-      CLASS(meshEdge), POINTER:: edge
+      DO i = 1, nInject
+        IF (solver%pusher(inject(i)%species%n)%pushSpecies) THEN 
+          nPartInj = nPartInj + inject(i)%nParticles
 
-      REAL(8):: direction(1:3)
+        END IF
-
-      !Insert particles
-      !$OMP DO
-      DO e = 1, self%nEdges
-        ! Select edge for injection
-        edge => self%edges(e)%obj
-        ! Inject particles in edge
-        DO i = 1, self%particlesPerEdge(e)
-          allocate(part)
-          ! Index in the partInj array
-          !Particle is considered to be inside the domain
-          part%n_in = .true.
-          !Random position in edge
-          part%r = edge%randPos()
-          !Assign weight to particle.
-          part%weight = self%weightPerEdge(e)
-          !Volume associated to the edge:
-          IF (ASSOCIATED(edge%e1)) THEN
-            part%cell = edge%e1%n
-
-          ELSEIF (ASSOCIATED(edge%e2)) THEN
-            part%cell = edge%e2%n
-
-          ELSE
-            CALL criticalError("No Volume associated to edge", 'addParticles')
-
-          END IF
-          part%cellColl = edge%eColl%n
-          sp = self%species%n
-
-          !Assign particle type
-          part%species => self%species
-
-          if (all(self%n == 0.D0)) then
-            direction =  edge%normal
-
-          else
-            direction = self%n
-
-          end if
-
-          part%v = 0.D0
-
-          ! do while(dot_product(partInj(n)%v, direction) <= 0.d0)
-            part%v = self%vMod*direction +  (/ self%v(1)%obj%randomVel(), &
-                                                     self%v(2)%obj%randomVel(), &
-                                                     self%v(3)%obj%randomVel() /)
-            !If injecting a no-drift distribution and velocity is negative, reflect
-            if ((self%vMod == 0.D0) .and. &
-                (dot_product(part%v, direction) <= 0.D0)) then
-              part%v = - part%v
-
-            end if
-
-          ! end do
-
-          !Obtain natural coordinates of particle in cell
-          part%Xi = mesh%cells(part%cell)%obj%phy2log(part%r)
-
-          ! Add particle to global list
-          call partInj%setLock()
-          call partInj%add(part)
-          call partInj%unsetLock()
-
-        END DO
 
       END DO
-      !$OMP END DO
 
-    END SUBROUTINE addParticles
+      IF (ALLOCATED(partInj)) DEALLOCATE(partInj)
+      ALLOCATE(partInj(1:nPartInj))
+      !$OMP END SINGLE
 
-    ! Writes the value of injects
+      DO i=1, nInject
-    subroutine writeInjects()
+        IF (solver%pusher(inject(i)%species%n)%pushSpecies) THEN 
-      use moduleCaseparam, only: timeStep
+          CALL inject(i)%addParticles()
-      use moduleOutput, only: fileID_inject, &
-                              formatFileName, &
-                              informFileCreation,&
-                              injectOutput,&
-                              generateFilePath, &
-                              prefix
-      implicit none
-      
-      integer:: i
-      character(:), allocatable:: fileName
 
-      if (injectOutput) then
+        END IF
-        fileName = formatFileName(prefix, 'injects', 'csv', timeStep)
+      END DO
-        call informFileCreation(fileName)
-        open(fileID_inject, file = generateFilePath(fileName))
 
-        do i = 1, nInject
+    END SUBROUTINE doInjects
-          if (associated(injects(i)%obj%print)) then
-            call injects(i)%obj%print(fileID_inject)
 
-          end if
-
-        end do
-
-        close(fileID_inject)
-
-      end if
-
-    end subroutine writeInjects
-
-    ! Write information about quasiNeutral inject
-    subroutine printQuasiNeutral(self, fileID)
-      use moduleOutput, only: fmtColInt, fmtColReal
-      implicit none
-
-      class(injectGeneric), intent(inout):: self
-      integer, intent(in):: fileID
-      integer:: e
-
-      write(fileID, '(A)') self%name
-      write(fileID, '(A,",",A)') '"Edge id"', '"weight of particles"'
-      do e = 1, self%nEdges
-        write(fileID, '('//fmtColInt//','//fmtColReal//')') self%edges(e)%obj%n, self%weightPerEdge(e)
-
-      end do
-
-    end subroutine printQuasiNeutral
-
-    ! Inits for different velocity distribution functions
     SUBROUTINE initVelDistMaxwellian(velDist, temperature, m)
       IMPLICIT NONE
 
       CLASS(velDistGeneric), ALLOCATABLE, INTENT(out):: velDist
       REAL(8), INTENT(in):: temperature, m
 
-      velDist = velDistMaxwellian(vTh = DSQRT(temperature/m))
+      velDist = velDistMaxwellian(vTh = DSQRT(2.d0*temperature/m))
 
     END SUBROUTINE initVelDistMaxwellian
 
@@ -456,7 +192,7 @@ MODULE moduleInject
       CLASS(velDistGeneric), ALLOCATABLE, INTENT(out):: velDist
       REAL(8), INTENT(in):: temperature, m
 
-      velDist = velDistHalfMaxwellian(vTh = DSQRT(temperature/m))
+      velDist = velDistHalfMaxwellian(vTh = DSQRT(2.d0*temperature/m))
 
     END SUBROUTINE initVelDistHalfMaxwellian
 
@@ -469,4 +205,101 @@ MODULE moduleInject
 
     END SUBROUTINE initVelDistDelta
 
+    !Add particles for the injection
+    SUBROUTINE addParticles(self)
+      USE moduleSpecies
+      USE moduleSolver
+      USE moduleMesh
+      USE moduleRandom
+      USE moduleErrors
+      IMPLICIT NONE
+
+      CLASS(injectGeneric), INTENT(in):: self
+      INTEGER, SAVE:: nMin
+      INTEGER:: i, e
+      INTEGER:: n, sp
+      CLASS(meshEdge), POINTER:: randomEdge
+      REAL(8):: direction(1:3)
+
+      !Insert particles
+      !$OMP SINGLE
+      nMin = 0
+      DO i = 1, self%id -1
+        IF (solver%pusher(inject(i)%species%n)%pushSpecies) THEN 
+          nMin = nMin + inject(i)%nParticles
+
+        END IF
+
+      END DO
+      nMin = nMin + 1
+      !$OMP END SINGLE
+
+      !$OMP DO
+      DO e = 1, self%nEdges
+        ! Select edge for injection
+        randomEdge => self%edges(e)%obj
+        ! Inject particles in edge
+        DO i = 1, self%particlesPerEdge(e)
+          ! Index in the global partInj array
+          n = nMin - 1 + SUM(self%particlesPerEdge(1:e-1)) + i
+          !Particle is considered to be outside the domain
+          partInj(n)%n_in = .FALSE.
+          !Random position in edge
+          partInj(n)%r = randomEdge%randPos()
+          !Assign weight to particle.
+          partInj(n)%weight = self%weightPerEdge(e)
+          !Volume associated to the edge:
+          IF (ASSOCIATED(randomEdge%e1)) THEN
+            partInj(n)%cell = randomEdge%e1%n
+
+          ELSEIF (ASSOCIATED(randomEdge%e2)) THEN
+            partInj(n)%cell = randomEdge%e2%n
+
+          ELSE
+            CALL criticalError("No Volume associated to edge", 'addParticles')
+
+          END IF
+          partInj(n)%cellColl = randomEdge%eColl%n
+          sp = self%species%n
+
+          !Assign particle type
+          partInj(n)%species => self%species
+
+          if (all(self%n == 0.D0)) then
+            direction =  randomEdge%normal
+
+          else
+            direction = self%n
+
+          end if
+
+          partInj(n)%v = 0.D0
+
+          do while(dot_product(partInj(n)%v, direction) <= 0.d0)
+            partInj(n)%v = self%vMod*direction +  (/ self%v(1)%obj%randomVel(), &
+                                                     self%v(2)%obj%randomVel(), &
+                                                     self%v(3)%obj%randomVel() /)
+            !If injecting a no-drift distribution and velocity is negative, reflect
+            if ((self%vMod == 0.D0) .and. &
+                (dot_product(partInj(n)%v, direction) <= 0.D0)) then
+              partInj(n)%v = - partInj(n)%v
+
+            end if
+
+          end do
+
+          !Obtain natural coordinates of particle in cell
+          partInj(n)%Xi = mesh%cells(partInj(n)%cell)%obj%phy2log(partInj(n)%r)
+          !Push new particle with the minimum time step
+          CALL solver%pusher(sp)%pushParticle(partInj(n), tau(sp))
+          !Assign cell to new particle
+          CALL solver%updateParticleCell(partInj(n))
+
+        END DO
+
+      END DO
+      !$OMP END DO
+
+    END SUBROUTINE addParticles
+
 END MODULE moduleInject

src/modules/moduleList.f90

@@ -23,7 +23,6 @@ MODULE moduleList
 
   END TYPE listNode
 
-  TYPE(listNode):: partInj !Particles comming from injections
   TYPE(listNode):: partWScheme !Particles comming from the nonAnalogue scheme
   TYPE(listNode):: partCollisions !Particles created in collisional process
   TYPE(listNode):: partSurfaces !Particles created in surface interactions

src/modules/moduleSpecies.f90

@@ -48,8 +48,11 @@ MODULE moduleSpecies
 
   !Number of old particles
   INTEGER:: nPartOld
+  !Number of injected particles
+  INTEGER:: nPartInj
   !Arrays that contain the particles
   TYPE(particle), ALLOCATABLE, DIMENSION(:), TARGET:: partOld !array of particles from previous iteration
+  TYPE(particle), ALLOCATABLE, DIMENSION(:), TARGET:: partInj !array of inject particles
 
   CONTAINS
     FUNCTION speciesName2Index(speciesName) RESULT(sp)

src/modules/output/moduleOutput.f90

@@ -14,7 +14,6 @@ MODULE moduleOutput
   LOGICAL:: collOutput = .FALSE.
   LOGICAL:: emOutput   = .FALSE.
   logical:: boundaryParticleOutput = .false.
-  logical:: injectOutput = .false.
 
   ! Prefix for iteration files
   character(len=*), parameter:: prefix = 'Step'
@@ -34,7 +33,6 @@ MODULE moduleOutput
   integer, parameter:: fileID_output = 20           ! Base id for species/collisions/EM output
   integer, parameter:: fileID_boundaryParticle = 30 ! Particle boundaries
   integer, parameter:: fileID_boundaryEM = 31       ! EM boundaries
-  integer, parameter:: fileID_inject = 32          ! Injects
   integer, parameter:: fileID_reference = 40        ! Reference values
   integer, parameter:: fileID_time =50              ! Computation time
 

src/modules/solver/moduleSolver.f90

@@ -235,21 +235,23 @@ MODULE moduleSolver
 
       INTEGER:: nn, n, e
       INTEGER, SAVE:: nPartNew
-      INTEGER, SAVE:: nOldIn, nInj, nWScheme, nCollisions, nSurfaces
+      INTEGER, SAVE:: nInjIn, nOldIn, nWScheme, nCollisions, nSurfaces
       TYPE(particle), ALLOCATABLE, SAVE:: partTemp(:)
       INTEGER:: s
 
       !$OMP SECTIONS
       !$OMP SECTION
+      nInjIn = 0
+      IF (ALLOCATED(partInj)) THEN
+        nInjIn = COUNT(partInj%n_in)
+
+      END IF
+      !$OMP SECTION
       nOldIn = 0
       IF (ALLOCATED(partOld)) THEN
         nOldIn = COUNT(partOld%n_in)
 
       END IF
-
-      !$OMP SECTION
-      nInj = partInj%amount
-
       !$OMP SECTION
       nWScheme = partWScheme%amount
 
@@ -265,14 +267,30 @@ MODULE moduleSolver
 
       !$OMP SINGLE
       CALL MOVE_ALLOC(partOld, partTemp)
-      nPartNew = nInj + nOldIn + nWScheme + nCollisions + nSurfaces
+      nPartNew = nInjIn + nOldIn + nWScheme + nCollisions + nSurfaces
       ALLOCATE(partOld(1:nPartNew))
       !$OMP END SINGLE
 
       !$OMP SECTIONS
       !$OMP SECTION
-      !Reset particles from previous iteration
+      !Reset particles from injection
       nn = 0
+      DO n = 1, nPartInj
+        IF (partInj(n)%n_in) THEN
+          nn = nn + 1
+          partOld(nn) = partInj(n)
+          IF (nProbes > 0) THEN
+            CALL doProbes(partOld(nn))
+
+          END IF
+
+        END IF
+
+      END DO
+
+      !$OMP SECTION
+      !Reset particles from previous iteration
+      nn = nInjIn
       DO n = 1, nPartOld
         IF (partTemp(n)%n_in) THEN
           nn = nn + 1
@@ -286,24 +304,19 @@ MODULE moduleSolver
 
       END DO
 
-      !$OMP SECTION
-      !Reset particles from injection
-      nn = nOldIn
-      call resetList(partInj, partOld, nn)
-
       !$OMP SECTION
       !Reset particles from weighting scheme
-      nn = nOldIn + nInj
+      nn = nInjIn + nOldIn
       CALL resetList(partWScheme, partOld, nn)
 
       !$OMP SECTION
       !Reset particles from collisional process
-      nn = nOldIn + nInj + nWScheme
+      nn = nInjIn + nOldIn + nWScheme
       CALL resetList(partCollisions, partOld, nn)
 
       !$OMP SECTION
       !Reset particles from surface process
-      nn = nOldIn + nInj + nWScheme + nCollisions
+      nn = nInjIn + nOldIn + nWScheme + nCollisions
       CALL resetList(partSurfaces, partOld, nn)
 
       !$OMP SECTION
@@ -460,28 +473,6 @@ MODULE moduleSolver
 
     END SUBROUTINE splitParticle
 
-    !Injection of particles
-    SUBROUTINE doInjects()
-      USE moduleSpecies
-      use moduleInject
-      IMPLICIT NONE
-
-      INTEGER:: i, sp
-      
-      DO i=1, nInject
-        associate(inject => injects(i)%obj)
-        sp = inject%species%n
-        IF (solver%pusher(sp)%pushSpecies) THEN 
-
-          CALL inject%addParticles()
-
-        END IF
-        end associate
-
-      END DO
-
-    END SUBROUTINE doInjects
-
     SUBROUTINE updateParticleCell(self, part)
       USE moduleSpecies
       USE moduleMesh
@@ -529,7 +520,6 @@ MODULE moduleSolver
       USE moduleSpecies
       USE moduleCompTime
       USE moduleProbe
-      use moduleInject, only: writeInjects
       USE moduleCaseParam, ONLY: timeStep
       IMPLICIT NONE
 
@@ -549,9 +539,6 @@ MODULE moduleSolver
         ! Output of boundaries
         call boundariesParticle_write()
 
-        ! Output of inejcts
-        call writeInjects()
-
         WRITE(*, "(5X,A21,I10,A1,I10)") "t/tFinal: ", timeStep, "/", tFinal
         WRITE(*, "(5X,A21,I10)")        "Particles: ", nPartOld
         IF (timeStep == 0) THEN