runs/1D_Cathode/mesh.csv

@@ -1,52 +0,0 @@
-Position(m),Physical ID
-0.0,1
-4e-05,0
-8e-05,0
-0.00012000000000000002,0
-0.00016,0
-0.0002,0
-0.00024000000000000003,0
-0.00028000000000000003,0
-0.00032,0
-0.00036,0
-0.0004,0
-0.00044,0
-0.00048000000000000007,0
-0.0005200000000000001,0
-0.0005600000000000001,0
-0.0006000000000000001,0
-0.00064,0
-0.00068,0
-0.00072,0
-0.00076,0
-0.0008,0
-0.00084,0
-0.00088,0
-0.00092,0
-0.0009600000000000001,0
-0.001,0
-0.0010400000000000001,0
-0.00108,0
-0.0011200000000000001,0
-0.00116,0
-0.0012000000000000001,0
-0.00124,0
-0.00128,0
-0.0013200000000000002,0
-0.00136,0
-0.0014000000000000002,0
-0.00144,0
-0.0014800000000000002,0
-0.00152,0
-0.0015600000000000002,0
-0.0016,0
-0.0016400000000000002,0
-0.00168,0
-0.0017200000000000002,0
-0.00176,0
-0.0018000000000000002,0
-0.00184,0
-0.0018800000000000002,0
-0.0019200000000000003,0
-0.0019600000000000004,0
-0.002,2

runs/cylFlow/input.json

@@ -8,25 +8,28 @@
   "geometry": {
     "dimension": 2,
     "type":     "Cyl",
-    "meshType": "vtu",
-    "meshFile": "meshSingle.vtu"
+    "meshType": "gmsh2",
+    "meshFile": "meshSingle.msh"
   },
   "species": [
     {"name": "Argon",  "type": "neutral", "mass": 6.633e-26, "weight": 5.0e8}
   ],
-  "boundaries": { 
-    "particles": [
-      {"name": "Transparent", "type": "transparent"},
-      {"name": "Reflection",  "type": "reflection"},
-      {"name": "Axis",        "type": "axis"}
-    ],
-  },
-  "physicalSurfaces": [
-    {"index": 1, "particles":["Transparent"]},
-    {"index": 2, "particles":["Reflection"]},
-    {"index": 3, "particles":["Transparent"]},
-    {"index": 4, "particles":["Reflection"]},
-    {"index": 5, "particles":["Axis"]},
+  "boundary": [ 
+    {"name": "Injection",      "physicalSurface": 1, "bTypes": [
+                                                       {"type": "transparent"}
+                                                      ]},
+    {"name": "Chamber Walls",  "physicalSurface": 2, "bTypes": [
+                                                       {"type": "reflection"}
+                                                      ]},
+    {"name": "Exterior",       "physicalSurface": 3, "bTypes": [
+                                                       {"type": "transparent"}
+                                                      ]},
+    {"name": "Cylinder Walls", "physicalSurface": 4, "bTypes": [
+                                                       {"type": "reflection"}
+                                                      ]},
+    {"name": "Axis",           "physicalSurface": 5, "bTypes": [
+                                                       {"type": "axis"}
+                                                      ]}
   ],
   "inject": [
     {"name": "Nozzle", "species": "Argon", "flow": 10.0, "units": "sccm",     "v": 300.0, "T": [300.0, 300.0, 300.0],

runs/cylFlow/inputDualMesh.json

@@ -8,26 +8,29 @@
   "geometry": {
     "dimension": 2,
     "type":     "Cyl",
-    "meshType": "vtu",
-    "meshFile": "mesh.vtu",
-    "meshCollisions": "meshColl.vtu"
+    "meshType": "gmsh2",
+    "meshFile": "mesh.msh",
+    "meshCollisions": "meshColl.msh"
   },
   "species": [
     {"name": "Argon",  "type": "neutral", "mass": 6.633e-26, "weight": 5.0e8}
   ],
-  "boundaries": { 
-    "particles": [
-      {"name": "Transparent", "type": "transparent"},
-      {"name": "Reflection",  "type": "reflection"},
-      {"name": "Axis",        "type": "axis"}
-    ],
-  },
-  "physicalSurfaces": [
-    {"index": 1, "particles":["Transparent"]},
-    {"index": 2, "particles":["Reflection"]},
-    {"index": 3, "particles":["Transparent"]},
-    {"index": 4, "particles":["Reflection"]},
-    {"index": 5, "particles":["Axis"]},
+  "boundary": [ 
+    {"name": "Injection",      "physicalSurface": 1, "bTypes": [
+                                                       {"type": "transparent"}
+                                                      ]},
+    {"name": "Chamber Walls",  "physicalSurface": 2, "bTypes": [
+                                                       {"type": "reflection"}
+                                                      ]},
+    {"name": "Exterior",       "physicalSurface": 3, "bTypes": [
+                                                       {"type": "transparent"}
+                                                      ]},
+    {"name": "Cylinder Walls", "physicalSurface": 4, "bTypes": [
+                                                       {"type": "reflection"}
+                                                      ]},
+    {"name": "Axis",           "physicalSurface": 5, "bTypes": [
+                                                       {"type": "axis"}
+                                                      ]}
   ],
   "inject": [
     {"name": "Nozzle", "species": "Argon", "flow": 10.0, "units": "sccm",     "v": 300.0, "T": [300.0, 300.0, 300.0],

src/modules/init/moduleInput.f90

@@ -1260,7 +1260,7 @@ MODULE moduleInput
             mesh%edges(e)%obj%eColl => meshColl%cells(nVolColl)%obj
 
           ELSE
-            CALL criticalError("No connection between edge and meshColl", "readGeometry")
+            CALL criticalError("No connection between edge and meshColl", "initInject")
 
           END IF