Clean-up!

Trying to reduce warnings and unused variables in the code. This should
not be in this branch.

src/modules/init/moduleInput.f90

@@ -308,7 +308,7 @@ MODULE moduleInput
       LOGICAL:: found
       CHARACTER(:), ALLOCATABLE:: object
       INTEGER:: nInitial
-      INTEGER:: i, j, p, e
+      INTEGER:: i, p, e
       CHARACTER(LEN=2):: iString
       CHARACTER(:), ALLOCATABLE:: spName
       INTEGER:: sp
@@ -923,7 +923,6 @@ MODULE moduleInput
       LOGICAL:: found
       CHARACTER(:), ALLOCATABLE:: meshFormat, meshFile
       REAL(8):: volume
-      CHARACTER(:), ALLOCATABLE:: meshFileVTU !Temporary to test VTU OUTPUT
 
       object = 'geometry'
 

src/modules/mesh/2DCyl/moduleMesh2DCyl.f90

@@ -582,8 +582,6 @@ MODULE moduleMesh2DCyl
       REAL(8):: detJ
       REAL(8):: fPsi(1:4)
       REAL(8):: dPsi(1:3, 1:4), pDer(1:3, 1:3)
-      REAL(8):: corrUp, corrDown
-      REAL(8):: dZ, r2, r1
 
       self%volume  = 0.D0
 

src/modules/mesh/inout/gmsh2/moduleMeshInputGmsh2.f90

@@ -108,6 +108,7 @@ MODULE moduleMeshInputGmsh2
       READ(10, *) totalNumElem
 
       !Count edges and volume elements
+      numEdges = 0
       SELECT TYPE(self)
       TYPE IS(meshParticles)
         self%numEdges = 0
@@ -342,7 +343,7 @@ MODULE moduleMeshInputGmsh2
 
       DO i = 1, numNodes
         !Reads the density
-        READ(10, *), e, density(i)
+        READ(10, *) e, density(i)
 
       END DO
 
@@ -353,7 +354,7 @@ MODULE moduleMeshInputGmsh2
 
       DO i = 1, numNodes
         !Reads the velocity
-        READ(10, *), e, velocity(i, 1:3)
+        READ(10, *) e, velocity(i, 1:3)
 
       END DO
 

src/modules/mesh/inout/vtu/moduleMeshInputVTU.f90

@@ -275,6 +275,7 @@ MODULE moduleMeshInputVTU
       END DO
 
       !Count the number of edges
+      numEdges = 0
       SELECT CASE(self%dimen)
       CASE(3)
         !Edges are triangles, type 5 in VTK

src/modules/mesh/inout/vtu/moduleMeshOutputVTU.f90

@@ -315,9 +315,8 @@ MODULE moduleMeshOutputVTU
 
       CLASS(meshParticles), INTENT(in):: self
       INTEGER, INTENT(in):: t
-      INTEGER:: n, i, fileID
+      INTEGER:: i, fileID
       CHARACTER(:), ALLOCATABLE:: fileName, fileNameCollection
-      TYPE(outputFormat):: output(1:self%numNodes)
 
       fileID = 60
 
@@ -352,10 +351,9 @@ MODULE moduleMeshOutputVTU
 
       CLASS(meshGeneric), INTENT(in):: self
       INTEGER, INTENT(in):: t
-      INTEGER:: n, i, fileID
+      INTEGER:: fileID
       CHARACTER(:), ALLOCATABLE:: fileName, fileNameCollection
       CHARACTER (LEN=iterationDigits):: tstring
-      TYPE(outputFormat):: output(1:self%numNodes)
 
       fileID = 62
 
@@ -424,9 +422,8 @@ MODULE moduleMeshOutputVTU
       IMPLICIT NONE
 
       CLASS(meshParticles), INTENT(in):: self
-      INTEGER:: n, i, fileIDMean, fileIDDeviation
+      INTEGER:: i, fileIDMean, fileIDDeviation
       CHARACTER(:), ALLOCATABLE:: fileNameMean, fileNameDeviation
-      TYPE(outputFormat):: output(1:self%numNodes)
 
       fileIDMean = 66
       fileIDDeviation = 67

src/modules/mesh/moduleMesh.f90

@@ -1025,6 +1025,9 @@ MODULE moduleMesh
           ALLOCATE(deltaV_ij(1:cell%listPart_in(i)%amount, 1:3))
           ALLOCATE(p_ij(1:cell%listPart_in(i)%amount, 1:3))
           ALLOCATE(mass_ij(1:cell%listPart_in(i)%amount))
+          deltaV_ij = 0.D0
+          p_ij      = 0.D0
+          mass_ij   = 0.D0
           !Loop over particles of species_i
           partTemp => cell%listPart_in(i)%head
           p = 1
@@ -1109,6 +1112,9 @@ MODULE moduleMesh
             ALLOCATE(deltaV_ji(1:cell%listPart_in(j)%amount, 1:3))
             ALLOCATE(p_ji(1:cell%listPart_in(j)%amount, 1:3))
             ALLOCATE(mass_ji(1:cell%listPart_in(j)%amount))
+            deltaV_ji = 0.D0
+            p_ji      = 0.D0
+            mass_ji   = 0.D0
             !Loop over particles of species_j
             partTemp => cell%listPart_in(j)%head
             p = 1

src/modules/moduleInject.f90

@@ -151,28 +151,29 @@ MODULE moduleInject
       ! Information about species and flux
       self%species => species(sp)%obj
       tauInject    = tau(self%species%n)
+      ! Convert units
       SELECT CASE(units)
       CASE ("sccm")
         !Standard cubic centimeter per minute
-        fluxPerStep = flow*sccm2atomPerS*tauInject*ti_ref
+        fluxPerStep = flow*sccm2atomPerS
 
       CASE ("A")
         !Current in Ampers
-        fluxPerStep = flow*tauInject*ti_ref/qe
+        fluxPerStep = flow/qe
 
       CASE ("Am2")
         !Input current in Ampers per square meter
-        fluxPerStep = flow*tauInject*ti_ref*self%surface*L_ref**2/qe
+        fluxPerStep = flow*self%surface*L_ref**2/qe
 
       CASE ("part/s")
         !Input current in Ampers
-        fluxPerStep = flow*tauInject*ti_ref
+        fluxPerStep = flow
 
       CASE DEFAULT
         CALL criticalError("No support for units: " // units, 'initInject')
 
       END SELECT
-      fluxPerStep = fluxPerStep / self%surface
+      fluxPerStep = fluxPerStep * tauInject * ti_ref / self%surface
 
       !Assign particles per edge
       IF (particlesPerEdge > 0) THEN
@@ -307,16 +308,13 @@ MODULE moduleInject
       USE moduleMesh
       USE moduleRandom
       USE moduleErrors
-      USE moduleRefParam, ONLY: L_ref
       IMPLICIT NONE
 
       CLASS(injectGeneric), INTENT(in):: self
-      INTEGER:: randomX
-      INTEGER, SAVE:: nMin, nMax !Min and Max index in partInj array
+      INTEGER, SAVE:: nMin
       INTEGER:: i, e
       INTEGER:: n, sp
       CLASS(meshEdge), POINTER:: randomEdge
-      INTEGER:: particlesPerEdge
       REAL(8):: direction(1:3)
 
       !Insert particles

src/modules/solver/electromagnetic/moduleEM.f90

@@ -30,8 +30,9 @@ MODULE moduleEM
       INTEGER, ALLOCATABLE:: nodes(:)
       INTEGER:: n
 
+      nNodes = 1
       nNodes = edge%nNodes
-      nodes = edge%getNodes(nNodes)
+      nodes  = edge%getNodes(nNodes)
 
       DO n = 1, nNodes
         SELECT CASE(self%typeEM)